Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0002800 Rhododendron simsii HOM05D000257 ORTHO05D339335 2.0e-43 178.7 90 100.0
RhsimUnG0014000 Rhododendron simsii HOM05D000257 ORTHO05D339390 2.0e-43 178.7 90 100.0
Rhsim03G0003000 Rhododendron simsii HOM05D000257 ORTHO05D008920 6.0e-08 60.8 51 66.7
GSVIVG01033438001 Vitis vinifera HOM05D000257 ORTHO05D008920 7.8e-08 60.5 51 66.7
CSS0043202 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D008920 1.7e-07 59.3 51 66.7
Cc06_g15120 Coffea canephora HOM05D000257 ORTHO05D008920 2.3e-07 58.9 51 66.7
Cc06_g15500 Coffea canephora HOM05D000257 ORTHO05D008920 2.3e-07 58.9 51 66.7
Cfa020127 Carpinus fangiana HOM05D000257 ORTHO05D008920 3.0e-07 58.5 51 64.7
AUR62032739 Chenopodium quinoa HOM05D000257 ORTHO05D008920 3.0e-07 58.5 51 64.7
Haze_20049 Corylus avellana HOM05D000257 ORTHO05D008920 3.0e-07 58.5 51 64.7
Haze_20056 Corylus avellana HOM05D000257 ORTHO05D008920 3.0e-07 58.5 51 64.7
Manes.09G039700 Manihot esculenta HOM05D000257 ORTHO05D008920 3.0e-07 58.5 51 64.7
BolC8t50988H Brassica oleracea HOM05D000257 ORTHO05D008920 3.9e-07 58.2 51 62.7
CiPaw.09G027200 Carya illinoinensis HOM05D000257 ORTHO05D008920 3.9e-07 58.2 51 64.7
ClCG08G002150 Citrullus lanatus HOM05D000257 ORTHO05D008920 3.9e-07 58.2 51 62.7
RhsimUnG0013800 Rhododendron simsii HOM05D000257 ORTHO05D008920 3.9e-07 58.2 181 31.5
Sed0012369 Sechium edule HOM05D000257 ORTHO05D008920 3.9e-07 58.2 51 62.7
MSTRG.26075 Avicennia marina HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
Ca_16385_v3 Cicer arietinum L. HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
Ca_29701_v3 Cicer arietinum L. HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
Dinv24038 Davidia involucrata HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
ECA233G4275 Erigeron canadensis HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
Oeu024501.2 Olea europaea HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
Phvul.001G200600 Phaseolus vulgaris HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 64.7
TAR633G1068 Trochodendron aralioides HOM05D000257 ORTHO05D008920 5.1e-07 57.8 51 62.7
AL5G40290 Arabidopsis lyrata HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 64.7
BcaC07g40247 Brassica carinata HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 62.7
A09p51080 Brassica napus HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 62.7
BraA09t40554Z Brassica rapa HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 62.7
Carub.0005s2527 Capsella rubella HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 64.7
Glyma.19G204700 Glycine max HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 62.7
Lsat_1_v5_gn_6_36700 Lactuca sativa HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 60.8
Sp5g04350 Schrenkiella parvula HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 64.7
Hund24824 Selenicereus undatus HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 62.7
Sopen01g047570 Solanum pennellii HOM05D000257 ORTHO05D008920 6.6e-07 57.4 51 62.7
FvH4_6g21580 Fragaria vesca HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 62.7
FAN02G3287 Fragaria x ananassa HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 62.7
FAN05G5228 Fragaria x ananassa HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 62.7
FAN14G1275 Fragaria x ananassa HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 62.7
Hma1.2p1_0116F.1_g056180 Hydrangea macrophylla HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 64.7
Nitab4.5_0000213g0010 Nicotiana tabacum HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 62.7
Nitab4.5_0005082g0050 Nicotiana tabacum HOM05D000257 ORTHO05D008920 8.7e-07 57.0 51 62.7
Atru.chr8.1186 Acer truncatum HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 64.7
C08p33900 Brassica napus HOM05D000257 ORTHO05D008920 1.1e-06 56.6 49 63.3
CARHR168920 Cardamine hirsuta HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
AUR62015296 Chenopodium quinoa HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
Peaxi162Scf00463g00427 Petunia axillaris HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
PGR142G3257 Punica granatum HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
RcHm_v2.0_Chr3g0478831 Rosa chinensis HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
Solyc01g105040.3 Solanum lycopersicum HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
PGSC0003DMG400012565 Solanum tuberosum HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
THA.LOC104802764 Tarenaya hassleriana HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
VMungo1383G0614 Vigna mungo HOM05D000257 ORTHO05D008920 1.1e-06 56.6 51 62.7
Eucgr.K01866 Eucalyptus grandis HOM05D000257 ORTHO05D008920 1.5e-06 56.2 51 62.7
Gohir.A05G260600 Gossypium hirsutum HOM05D000257 ORTHO05D008920 1.5e-06 56.2 51 64.7
Gohir.D05G262800 Gossypium hirsutum HOM05D000257 ORTHO05D008920 1.5e-06 56.2 51 64.7
Gorai.009G274600 Gossypium raimondii HOM05D000257 ORTHO05D008920 1.5e-06 56.2 51 64.7
QL07p025025 Quercus lobata HOM05D000257 ORTHO05D008920 1.5e-06 56.2 51 62.7
CAN.G523.86 Capsicum annuum HOM05D000257 ORTHO05D008920 1.9e-06 55.8 51 62.7
Migut.K00021 Erythranthe guttata HOM05D000257 ORTHO05D008920 1.9e-06 55.8 51 62.7
SalBow2G1844 Salvia bowleyana HOM05D000257 ORTHO05D008920 1.9e-06 55.8 51 60.8
Thecc.05G178400 Theobroma cacao HOM05D000257 ORTHO05D008920 1.9e-06 55.8 51 64.7
Aa31LG10G13100 Aethionema arabicum HOM05D000257 ORTHO05D008920 2.5e-06 55.5 51 62.7
Thhalv10006002m.g Eutrema salsugineum HOM05D000257 ORTHO05D008920 2.5e-06 55.5 51 62.7
SGA_v2.0_scaffold274G46501 Striga asiatica HOM05D000257 ORTHO05D008920 2.5e-06 55.5 51 60.8
HPP92_024368 Vanilla planifolia HOM05D000257 ORTHO05D008920 2.5e-06 55.5 51 60.8
MELO3C020117.2 Cucumis melo HOM05D000257 ORTHO05D008920 3.3e-06 55.1 51 58.8
CsaV3_5G010780 Cucumis sativus L. HOM05D000257 ORTHO05D008920 3.3e-06 55.1 49 63.3
HanXRQChr07g0193161 Helianthus annuus HOM05D000257 ORTHO05D008920 3.3e-06 55.1 51 58.8
Nn7g35917 Nelumbo nucifera HOM05D000257 ORTHO05D008920 3.3e-06 55.1 51 60.8
PSO063G3767 Papaver somniferum HOM05D000257 ORTHO05D008920 3.3e-06 55.1 51 58.8
Psat3g025960 Pisum sativum HOM05D000257 ORTHO05D008920 3.3e-06 55.1 51 60.8
Aqoxy2G00496 Aquilegia oxysepala HOM05D000257 ORTHO05D008920 4.3e-06 54.7 51 58.8
SalBow1G8393 Salvia bowleyana HOM05D000257 ORTHO05D008920 4.3e-06 54.7 51 58.8
AT3G58520 Arabidopsis thaliana HOM05D000257 ORTHO05D008920 5.6e-06 54.3 51 60.8
EL10Ac3g06854 Beta vulgaris HOM05D000257 ORTHO05D008920 5.6e-06 54.3 51 58.8
Ciclev10011808m.g Citrus clementina HOM05D000257 ORTHO05D008920 5.6e-06 54.3 51 60.8
COL.COLO4_29392 Corchorus olitorius HOM05D000257 ORTHO05D008920 5.6e-06 54.3 51 62.7
MD14G1051500 Malus domestica HOM05D000257 ORTHO05D008920 5.6e-06 54.3 51 60.8
ATR0584G220 Amborella trichopoda HOM05D000257 ORTHO05D008920 7.3e-06 53.9 49 61.2
CANSAT64G2491 Cannabis sativa HOM05D000257 ORTHO05D008920 7.3e-06 53.9 57 54.4
Cpa.g.sc85.34 Carica papaya HOM05D000257 ORTHO05D008920 7.3e-06 53.9 51 60.8
CDE02G4336 Ceratophyllum demersum HOM05D000257 ORTHO05D008920 7.3e-06 53.9 51 58.8
Duzib128G1393 Durio zibethinus HOM05D000257 ORTHO05D008920 7.3e-06 53.9 51 62.7
MBI04_g09736_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D008920 7.3e-06 53.9 51 60.8
Sc19g0006220 Simmondsia chinensis HOM05D000257 ORTHO05D008920 7.3e-06 53.9 51 60.8
Ah.04g153000 Amaranthus hybridus HOM05D000257 ORTHO05D008920 9.6e-06 53.5 51 62.7
DCAR_019867 Daucus carota HOM05D000257 ORTHO05D008920 9.6e-06 53.5 51 56.9


User provided reference genes

Program Settings