Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 3.2e-69 265.0 136 100.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.2e-45 184.9 97 96.9
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.1e-32 143.7 97 78.4
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.0e-32 141.7 97 77.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.0e-31 139.4 97 76.3
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.6e-28 129.8 97 69.1
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 2.7e-28 129.0 97 71.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 3.5e-28 128.6 97 70.1
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 3.5e-28 128.6 97 69.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 3.5e-28 128.6 97 69.1
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 6.0e-28 127.9 97 68.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.0e-27 127.1 98 69.4
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.0e-27 127.1 97 68.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.3e-27 126.7 100 69.0
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.3e-27 126.7 97 66.0
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.0e-27 125.6 97 66.0
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.0e-27 125.6 97 66.0
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.0e-27 125.6 97 66.0
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.0e-27 125.6 97 66.0
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.0e-27 125.6 97 66.0
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 5.1e-27 124.8 97 68.0
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 5.1e-27 124.8 97 64.9
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.7e-27 124.4 97 68.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 6.7e-27 124.4 97 67.0
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 6.7e-27 124.4 97 67.0
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 8.7e-27 124.0 97 67.0
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 8.7e-27 124.0 97 66.0
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 8.7e-27 124.0 97 67.0
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.1e-26 123.6 97 67.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.1e-26 123.6 97 64.9
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.1e-26 123.6 97 67.0
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 1.5e-26 123.2 99 66.7
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.5e-26 122.5 96 67.7
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.3e-26 122.1 97 64.9
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 3.3e-26 122.1 97 68.0
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 3.3e-26 122.1 97 68.0
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.7e-26 121.3 97 64.9
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 5.7e-26 121.3 97 66.0
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 7.4e-26 120.9 97 62.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 7.4e-26 120.9 97 63.9
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 7.4e-26 120.9 97 63.9
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.3e-25 120.2 97 61.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.3e-25 120.2 97 68.0
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.6e-25 119.8 97 62.9
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.6e-25 119.8 97 63.9
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.6e-25 119.8 97 62.9
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.2e-25 119.4 97 63.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.8e-25 119.0 97 64.9
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.8e-25 119.0 98 65.3
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.8e-25 119.0 96 65.6
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 2.8e-25 119.0 97 60.8
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 3.7e-25 118.6 97 63.9
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.7e-25 118.6 97 59.8
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 3.7e-25 118.6 97 59.8
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 3.7e-25 118.6 97 58.8
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.8e-25 118.2 97 60.8
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 6.3e-25 117.9 97 64.9
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 8.2e-25 117.5 96 61.5
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.1e-24 117.1 99 64.6
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.1e-24 117.1 97 60.8
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.1e-24 117.1 97 67.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.8e-24 116.3 97 63.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.4e-24 115.9 97 59.8
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.4e-24 115.9 97 62.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.1e-24 115.5 97 62.9
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.1e-24 115.5 97 64.9
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 3.1e-24 115.5 97 62.9
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 3.1e-24 115.5 97 59.8
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 5.3e-24 114.8 98 65.3
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 5.3e-24 114.8 97 60.8
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 5.3e-24 114.8 98 66.3
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 9.0e-24 114.0 97 59.8
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.2e-23 113.6 98 64.3
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.2e-23 113.6 97 62.9
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-23 113.6 97 63.9
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.0e-23 112.8 97 62.9
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.0e-23 112.8 97 67.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 2.6e-23 112.5 98 62.2
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.4e-23 112.1 97 63.9
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 3.4e-23 112.1 100 60.0
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.5e-23 111.7 97 61.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 4.5e-23 111.7 97 60.8
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 4.5e-23 111.7 97 63.9
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 5.9e-23 111.3 97 64.9
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 7.6e-23 110.9 97 60.8
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.0e-22 110.5 98 64.3
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.0e-22 110.5 98 64.3
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-22 110.5 96 57.3
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.3e-22 110.2 98 61.2
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.3e-22 110.2 98 61.2
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.3e-22 110.2 98 61.2
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.3e-22 110.2 97 57.7
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.3e-22 110.2 97 62.9
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.2e-22 109.4 97 60.8
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 2.2e-22 109.4 97 61.9
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.9e-22 109.0 97 56.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.9e-22 109.0 95 62.1
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 2.9e-22 109.0 97 62.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.9e-22 109.0 97 58.8
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 6.5e-22 107.8 98 60.2
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 6.5e-22 107.8 98 60.2
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 6.5e-22 107.8 98 58.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.1e-21 107.1 97 59.8
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.1e-21 107.1 97 61.9
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.9e-21 106.3 97 57.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.5e-21 105.9 98 59.2
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 3.2e-21 105.5 98 59.2
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 3.2e-21 105.5 97 58.8
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 5.5e-21 104.8 98 56.1
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 9.4e-21 104.0 97 57.7
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.6e-20 103.2 119 50.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 2.1e-20 102.8 97 53.6
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 2.7e-20 102.4 97 57.7
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 7.9e-20 100.9 98 56.1
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.9e-20 100.9 97 53.6
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 3.0e-19 99.0 96 54.2
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 3.9e-19 98.6 96 54.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.5e-18 95.9 97 55.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.3e-18 95.5 97 55.7
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 5.7e-18 94.7 98 53.1
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 7.4e-18 94.4 97 50.5
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 9.7e-18 94.0 97 54.6
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 9.7e-18 94.0 97 53.6
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.7e-18 94.0 93 51.6
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.7e-17 93.2 86 61.6
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.7e-17 93.2 97 54.6
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.8e-17 92.4 98 53.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.4e-16 89.4 97 50.5
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 4.5e-15 85.1 99 44.4
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.1e-13 80.5 60 73.3
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.0e-11 73.9 94 45.7
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.7e-09 66.6 64 60.9
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 8.2e-09 64.3 106 37.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.2e-07 60.5 100 40.0
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-06 57.4 73 46.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.0e-06 57.4 102 35.3


User provided reference genes

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