Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 0.0e+00 1503.8 835 100.0
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 0.0e+00 1492.6 835 99.3
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 0.0e+00 1196.0 837 81.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 5.0e-274 948.0 870 63.9
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.6e-270 935.6 844 65.8
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 9.7e-270 933.7 844 65.2
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 4.7e-240 835.1 850 57.9
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 6.8e-239 831.2 858 56.6
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.0e-238 829.7 853 57.1
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 3.4e-238 828.9 852 58.1
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.3e-237 827.0 857 55.7
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.2e-237 826.2 856 57.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.7e-237 825.5 854 57.8
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.0e-234 815.1 890 54.3
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 9.5e-233 810.8 851 56.9
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 2.1e-232 809.7 875 55.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 2.6e-230 802.7 854 55.7
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 7.5e-230 801.2 855 55.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.2e-228 795.8 853 55.9
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 5.4e-228 795.0 883 52.9
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.6e-227 793.5 877 53.6
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 4.6e-227 792.0 869 54.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.0e-226 790.8 853 55.6
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 6.6e-226 788.1 860 54.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 5.6e-225 785.0 902 52.1
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 9.5e-225 784.3 862 54.6
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.6e-224 783.5 877 54.0
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.6e-224 783.5 902 52.3
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.1e-223 780.8 845 54.8
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-223 780.8 853 54.6
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.1e-223 780.8 915 52.7
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.8e-223 780.0 849 53.9
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-222 777.3 851 54.6
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.6e-222 776.2 853 53.8
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.4e-222 775.4 856 54.3
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 5.8e-222 775.0 864 52.7
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.3e-221 773.9 851 53.1
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.8e-221 772.3 885 54.9
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.4e-220 770.4 851 54.9
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.9e-220 770.0 901 54.6
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 4.1e-220 768.8 856 56.2
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 9.2e-220 767.7 825 54.1
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.2e-219 767.3 890 51.8
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.6e-219 766.9 822 55.7
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.5e-219 765.8 851 53.5
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.0e-218 764.2 890 51.8
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.3e-218 763.8 845 52.9
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 8.6e-218 761.1 856 55.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 8.6e-218 761.1 915 51.8
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 8.6e-218 761.1 840 53.5
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.1e-215 754.2 859 54.5
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.8e-215 753.4 825 54.8
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 6.9e-215 751.5 864 53.1
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 9.0e-215 751.1 876 51.4
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.1e-211 740.0 844 54.0
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 3.5e-211 739.2 860 52.2
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.7e-210 736.9 853 51.3
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.6e-206 723.0 836 51.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.7e-205 720.3 892 52.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 4.9e-205 718.8 871 50.5
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 4.9e-205 718.8 862 51.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.4e-204 717.2 857 51.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 4.2e-204 715.7 843 51.8
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 7.9e-203 711.4 878 53.1
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.1e-201 707.6 874 50.0
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.5e-198 697.2 786 53.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.1e-196 688.3 851 49.6
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 9.3e-196 688.0 849 49.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.6e-195 687.2 881 47.9
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 6.0e-195 685.3 722 54.8
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.3e-194 684.1 861 49.0
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.8e-194 683.7 842 50.2
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 3.9e-194 682.6 845 49.8
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 9.6e-193 677.9 849 48.9
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.4e-191 674.1 785 52.0
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 3.1e-191 672.9 850 48.9
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 9.0e-191 671.4 849 48.5
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 5.8e-190 668.7 853 50.9
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.2e-189 666.8 848 48.7
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 4.9e-189 665.6 848 47.9
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 7.1e-188 661.8 837 48.0
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 7.1e-188 661.8 802 50.2
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 7.9e-187 658.3 849 47.7
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 7.9e-187 658.3 685 54.5
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.8e-186 657.1 868 49.2
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 2.3e-186 656.8 844 48.0
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 8.7e-186 654.8 840 47.9
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.5e-185 654.1 940 46.2
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 9.7e-185 651.4 842 48.6
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.6e-184 650.6 841 47.9
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 6.3e-184 648.7 840 47.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.1e-183 647.9 669 53.8
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-183 647.5 840 47.9
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 2.4e-183 646.7 747 52.6
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.4e-183 646.7 841 47.2
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.6e-182 643.3 810 49.6
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-181 641.0 838 47.5
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-181 641.0 840 47.0
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.7e-181 640.6 643 56.0
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.9e-181 639.8 840 47.5
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 5.0e-181 639.0 850 47.9
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 6.5e-181 638.6 841 47.3
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 6.5e-181 638.6 641 54.6
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 6.1e-179 632.1 851 47.6
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.5e-177 626.7 813 49.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 4.8e-176 622.5 827 48.7
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 8.2e-176 621.7 842 47.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.2e-173 613.6 842 47.3
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.9e-173 613.2 485 64.9
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 5.9e-166 589.0 696 51.6
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 8.2e-160 568.5 813 47.0
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-159 567.8 808 45.5
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.2e-157 560.5 838 43.4
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 4.1e-151 539.7 909 41.3
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.2e-147 528.1 930 39.8
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 3.6e-147 526.6 902 40.8
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.5e-142 509.6 737 43.4
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.5e-134 483.4 487 53.6
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.3e-133 480.7 503 53.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 6.1e-131 472.6 837 39.9
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.4e-111 406.4 706 37.4
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.1e-101 373.2 344 58.1
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.7e-99 366.7 526 42.0
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.0e-98 363.6 760 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 7.9e-86 322.8 558 37.3
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.6e-84 316.6 542 38.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.4e-84 316.2 535 38.1
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-82 312.4 539 38.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.8e-77 295.0 496 38.9
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-75 287.3 480 36.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.8e-75 287.0 570 40.2
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-74 285.0 574 33.8
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-74 285.0 574 33.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-73 282.3 546 35.9
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.5e-73 282.0 384 48.2
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-73 282.0 534 34.1
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 6.7e-69 266.5 412 50.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 4.3e-60 237.3 668 33.1
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 9.7e-52 209.5 241 44.4
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.7e-46 190.7 204 55.4
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.7e-30 137.5 438 40.0
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-23 116.3 137 43.8
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.5e-23 115.9 386 31.3
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.7e-20 104.0 71 71.8
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.3e-16 92.8 209 33.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.0e-13 83.2 67 52.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 4.0e-13 81.3 126 38.1
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 7.5e-12 77.0 53 60.4
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 7.5e-12 77.0 54 59.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.5e-12 77.0 54 59.3
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.9e-11 74.3 67 47.8
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.0e-08 66.6 65 53.8
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.7e-08 65.9 49 67.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.5e-07 62.0 44 70.5
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 3.6e-06 58.2 61 52.5
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 4.7e-06 57.8 91 38.5


User provided reference genes

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