Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0006600 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.1e-93 346.7 179 100.0
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.2e-54 216.1 175 71.4
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 1.8e-48 196.4 177 66.1
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.0e-35 154.1 169 58.6
RhsimUnG0026900 Rhododendron simsii HOM05D003636 ORTHO05D013299 3.3e-34 149.1 114 72.8
Rhsim03G0241700 Rhododendron simsii HOM05D003636 ORTHO05D013299 4.4e-34 148.7 153 59.5
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 3.8e-30 135.6 166 50.0
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 2.7e-28 129.4 181 48.1
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 3.6e-28 129.0 180 48.3
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.1e-28 128.3 182 48.4
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.8e-27 126.7 182 48.4
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 2.6e-26 122.9 179 46.9
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.8e-24 116.7 165 46.7
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.2e-23 114.0 166 45.2
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.5e-23 112.5 176 46.6
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.5e-23 112.5 176 46.6
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 5.9e-23 111.7 175 46.3
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.3e-22 110.5 186 39.8
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 8.5e-22 107.8 166 43.4
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 2.5e-21 106.3 175 42.9
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 5.5e-21 105.1 168 42.9
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 5.5e-21 105.1 174 41.4
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 7.2e-21 104.8 167 42.5
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 9.4e-21 104.4 182 40.1
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 2.1e-20 103.2 172 41.3
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 6.1e-20 101.7 173 42.8
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 8.0e-20 101.3 178 38.8
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 8.0e-20 101.3 186 37.1
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 1.2e-18 97.4 170 42.4
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 9.8e-18 94.4 169 41.4
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 2.8e-17 92.8 169 40.2
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 2.8e-17 92.8 174 40.2
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 4.8e-17 92.0 166 41.0
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 4.8e-17 92.0 168 41.7
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 6.3e-17 91.7 166 39.8
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 6.3e-17 91.7 144 41.0
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 2.4e-16 89.7 168 39.3
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 3.1e-16 89.4 171 38.0
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 4.1e-16 89.0 173 39.3
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 5.4e-16 88.6 169 39.6
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 9.1e-16 87.8 173 36.4
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.6e-15 87.0 162 39.5
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 1.6e-15 87.0 173 35.8
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 2.7e-15 86.3 168 36.3
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 4.5e-15 85.5 180 37.8
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 4.5e-15 85.5 167 35.9
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 7.7e-15 84.7 183 37.7
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 1.0e-14 84.3 168 36.9
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 1.7e-14 83.6 151 35.8
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 2.2e-14 83.2 169 37.9
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 2.2e-14 83.2 172 35.5
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 5.0e-14 82.0 171 33.9
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 8.5e-14 81.3 169 35.5
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.1e-13 80.9 167 38.3
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 1.1e-13 80.9 165 36.4
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 1.1e-13 80.9 145 38.6
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.5e-13 80.5 164 35.4
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.9e-13 80.1 149 39.6
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 1.9e-13 80.1 90 53.3
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 1.9e-13 80.1 90 53.3
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 2.5e-13 79.7 161 37.3
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.5e-13 79.7 165 35.8
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 4.2e-13 79.0 165 37.0
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 5.5e-13 78.6 163 37.4
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 5.5e-13 78.6 172 33.7
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 9.4e-13 77.8 177 36.2
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 9.4e-13 77.8 171 33.3
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 2.1e-12 76.6 161 37.9
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 2.7e-12 76.3 156 37.8
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 2.7e-12 76.3 142 35.9
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 2.7e-12 76.3 173 34.1
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 3.6e-12 75.9 175 35.4
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 3.6e-12 75.9 173 36.4
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 3.6e-12 75.9 169 33.7
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 6.1e-12 75.1 166 32.5
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 1.0e-11 74.3 188 34.0
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 1.4e-11 73.9 148 37.2
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 3.0e-11 72.8 163 35.0
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 5.2e-11 72.0 163 34.4
Hma1.2p1_2670F.1_g326620 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 5.2e-11 72.0 92 48.9
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 8.8e-11 71.2 78 50.0
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 8.8e-11 71.2 162 34.6
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 8.8e-11 71.2 145 34.5
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.2e-10 70.9 162 35.2
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 5.7e-10 68.6 145 37.9
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 5.7e-10 68.6 155 34.8
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 9.8e-10 67.8 167 34.1
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 1.3e-09 67.4 142 36.6
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 1.7e-09 67.0 145 35.9
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 1.7e-09 67.0 145 35.9
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 1.7e-09 67.0 155 31.6
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 2.2e-09 66.6 146 37.0
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 2.8e-09 66.2 167 34.7
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 2.8e-09 66.2 171 31.0
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 2.8e-09 66.2 159 32.7
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 3.7e-09 65.9 145 35.2
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 3.7e-09 65.9 171 32.7
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 6.3e-09 65.1 167 34.7
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 6.3e-09 65.1 79 50.6
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 1.4e-08 63.9 159 32.1
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 1.8e-08 63.5 171 30.4
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 1.8e-08 63.5 155 32.9
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 3.1e-08 62.8 155 33.5
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 4.1e-08 62.4 145 35.2
Rhsim03G0241500 Rhododendron simsii HOM05D002784 ORTHO05D003113 5.4e-08 62.0 80 50.0
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 7.0e-08 61.6 72 51.4
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 7.0e-08 61.6 159 31.4
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 7.0e-08 61.6 155 32.9
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 2.7e-07 59.7 139 30.9
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 5.9e-07 58.5 141 33.3
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 1.3e-06 57.4 141 33.3
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 1.7e-06 57.0 82 43.9
Ca_14184_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 3.8e-06 55.8 83 43.4
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 5.0e-06 55.5 82 42.7


User provided reference genes

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