Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0006500 Rhododendron simsii HOM05D001176 ORTHO05D022296 2.1e-45 185.3 89 100.0
RhsimUnG0116400 Rhododendron simsii HOM05D001176 ORTHO05D022296 1.9e-30 135.6 70 97.1
Rhsim01G0201000 Rhododendron simsii HOM05D001176 ORTHO05D022296 1.8e-28 129.0 70 94.3
Actinidia03827 Actinidia chinensis HOM05D001176 ORTHO05D003317 1.7e-07 59.3 41 78.0
Ciclev10011312m.g Citrus clementina HOM05D001176 ORTHO05D003317 1.7e-07 59.3 41 78.0
DCAR_023843 Daucus carota HOM05D001176 ORTHO05D003317 1.7e-07 59.3 41 78.0
Prupe.6G358000 Prunus persica HOM05D001176 ORTHO05D003317 1.7e-07 59.3 41 78.0
Rhsim05G0168700 Rhododendron simsii HOM05D001176 ORTHO05D003317 1.7e-07 59.3 41 78.0
EL10Ac4g09433 Beta vulgaris HOM05D001176 ORTHO05D003317 2.3e-07 58.9 50 64.0
CSS0037928 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D003317 2.3e-07 58.9 41 75.6
Cpa.g.sc123.12 Carica papaya HOM05D001176 ORTHO05D003317 2.3e-07 58.9 41 75.6
Dinv05894 Davidia involucrata HOM05D001176 ORTHO05D003317 2.3e-07 58.9 41 75.6
Duzib106G0985 Durio zibethinus HOM05D001176 ORTHO05D003317 2.3e-07 58.9 41 75.6
Duzib128G0007 Durio zibethinus HOM05D001176 ORTHO05D003317 2.9e-07 58.5 41 73.2
PGR031G1111 Punica granatum HOM05D001176 ORTHO05D003317 2.9e-07 58.5 56 62.5
THA.LOC104814399 Tarenaya hassleriana HOM05D001176 ORTHO05D003317 2.9e-07 58.5 70 54.3
GSVIVG01019158001 Vitis vinifera HOM05D001176 ORTHO05D003317 2.9e-07 58.5 41 75.6
Zm00001eb258960 Zea mays HOM05D001176 ORTHO05D003317 2.9e-07 58.5 63 58.7
Atru.chr12.2158 Acer truncatum HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
MSTRG.9229 Avicennia marina HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
CiPaw.07G075100 Carya illinoinensis HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Migut.F02071 Erythranthe guttata HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Glyma.09G252800 Glycine max HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Glyma.18G239900 Glycine max HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Lj1g0018224 Lotus japonicus HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Nn1g03127 Nelumbo nucifera HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Nitab4.5_0000456g0030 Nicotiana tabacum HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Nitab4.5_0009814g0010 Nicotiana tabacum HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Oeu010181.1 Olea europaea HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Peaxi162Scf00215g00510 Petunia axillaris HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Phvul.008G056400 Phaseolus vulgaris HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
SalBow1G1247 Salvia bowleyana HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Sc09g0001650 Simmondsia chinensis HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Solyc04g051190.3 Solanum lycopersicum HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Sopen04g022560 Solanum pennellii HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
SGA_v2.0_scaffold13G06352 Striga asiatica HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
TWI59G0800 Tripterygium wilfordii HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
VMungo1383G3642 Vigna mungo HOM05D001176 ORTHO05D003317 3.9e-07 58.2 41 75.6
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 5.0e-07 57.8 70 52.9
FvH4_6g00890 Fragaria vesca HOM05D001176 ORTHO05D003317 5.0e-07 57.8 54 61.1
FAN05G5118 Fragaria x ananassa HOM05D001176 ORTHO05D003317 5.0e-07 57.8 54 61.1
FAN09G3806 Fragaria x ananassa HOM05D001176 ORTHO05D003317 5.0e-07 57.8 54 61.1
FAN14G4358 Fragaria x ananassa HOM05D001176 ORTHO05D003317 5.0e-07 57.8 54 61.1
Gohir.A13G154700 Gossypium hirsutum HOM05D001176 ORTHO05D003317 5.0e-07 57.8 41 73.2
Gohir.D13G159400 Gossypium hirsutum HOM05D001176 ORTHO05D003317 5.0e-07 57.8 41 73.2
Gorai.013G180200 Gossypium raimondii HOM05D001176 ORTHO05D003317 5.0e-07 57.8 41 73.2
Manes.09G183600 Manihot esculenta HOM05D001176 ORTHO05D003317 5.0e-07 57.8 41 73.2
Nn3g19881 Nelumbo nucifera HOM05D001176 ORTHO05D003317 5.0e-07 57.8 41 73.2
Pp3c5_28020 Physcomitrium patens HOM05D001176 ORTHO05D003317 5.0e-07 57.8 56 58.9
RcHm_v2.0_Chr3g0448381 Rosa chinensis HOM05D001176 ORTHO05D003317 5.0e-07 57.8 54 61.1
SEGI_13377 Sequoiadendron giganteum HOM05D001176 ORTHO05D003317 5.0e-07 57.8 41 75.6
ATR0088G045 Amborella trichopoda HOM05D001176 ORTHO05D003317 6.6e-07 57.4 41 73.2
CAN.G4.31 Capsicum annuum HOM05D001176 ORTHO05D003317 6.6e-07 57.4 41 75.6
COL.COLO4_27432 Corchorus olitorius HOM05D001176 ORTHO05D022296 6.6e-07 57.4 41 75.6
Eucgr.H01373 Eucalyptus grandis HOM05D001176 ORTHO05D003317 6.6e-07 57.4 41 73.2
Potri.013G088100 Populus trichocarpa HOM05D001176 ORTHO05D003317 6.6e-07 57.4 41 73.2
Rhsim01G0115800 Rhododendron simsii HOM05D001176 ORTHO05D022296 6.6e-07 57.4 39 74.4
Sabra13G0069700 Salix brachista HOM05D001176 ORTHO05D003317 6.6e-07 57.4 41 73.2
Cc09_g03290 Coffea canephora HOM05D001176 ORTHO05D003317 8.6e-07 57.0 41 70.7
MD12G1257000 Malus domestica HOM05D001176 ORTHO05D003317 8.6e-07 57.0 41 75.6
TAR362G0187 Trochodendron aralioides HOM05D001176 ORTHO05D003317 8.6e-07 57.0 41 75.6
Aqoxy2G03809 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 1.1e-06 56.6 41 73.2
Lalb_Chr03g0038311 Lupinus albus HOM05D001176 ORTHO05D003317 1.1e-06 56.6 41 73.2
MBI10_g09189_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D003317 1.1e-06 56.6 41 73.2
Os02g0817900 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D003317 1.1e-06 56.6 63 55.6
Thecc.05G203300 Theobroma cacao HOM05D001176 ORTHO05D003317 1.1e-06 56.6 41 73.2
AL1G45870 Arabidopsis lyrata HOM05D001176 ORTHO05D003317 1.5e-06 56.2 70 52.9
AT1G31800 Arabidopsis thaliana HOM05D001176 ORTHO05D003317 1.5e-06 56.2 70 52.9
AUR62000370 Chenopodium quinoa HOM05D001176 ORTHO05D003317 1.5e-06 56.2 50 62.0
PSO017G2236 Papaver somniferum HOM05D001176 ORTHO05D003317 1.5e-06 56.2 41 70.7
PSO063G1081 Papaver somniferum HOM05D001176 ORTHO05D003317 1.5e-06 56.2 41 70.7
CANSAT11G0194 Cannabis sativa HOM05D001176 ORTHO05D003317 1.9e-06 55.8 44 65.9
CARHR031100 Cardamine hirsuta HOM05D001176 ORTHO05D003317 1.9e-06 55.8 56 60.7
Thhalv10007138m.g Eutrema salsugineum HOM05D001176 ORTHO05D003317 1.9e-06 55.8 56 60.7
Sp1g27490 Schrenkiella parvula HOM05D001176 ORTHO05D003317 1.9e-06 55.8 56 60.7
HPP92_003369 Vanilla planifolia HOM05D001176 ORTHO05D003317 1.9e-06 55.8 41 70.7
Cfa006301 Carpinus fangiana HOM05D001176 ORTHO05D003317 2.5e-06 55.5 41 73.2
Ca_07959_v3 Cicer arietinum L. HOM05D001176 ORTHO05D003317 2.5e-06 55.5 41 73.2
Haze_04497 Corylus avellana HOM05D001176 ORTHO05D003317 2.5e-06 55.5 41 73.2
Psat3g105040 Pisum sativum HOM05D001176 ORTHO05D003317 2.5e-06 55.5 41 73.2
arahy.Tifrunner.gnm1.ann1.570P5C Arachis hypogaea HOM05D001176 ORTHO05D003317 3.3e-06 55.1 42 66.7
arahy.Tifrunner.gnm1.ann1.F8T0MB Arachis hypogaea HOM05D001176 ORTHO05D003317 3.3e-06 55.1 42 66.7
CBR_g41079 Chara braunii HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 68.3
Cre02.g142266 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D003317 3.3e-06 55.1 57 50.9
ClCG10G008080 Citrullus lanatus HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 70.7
MELO3C014945.2 Cucumis melo HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 70.7
CsaV3_3G007050 Cucumis sativus L. HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 70.7
Oeu054597.1 Olea europaea HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 70.7
Sed0016129 Sechium edule HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 70.7
Sed0016380 Sechium edule HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 70.7
vmacro19610 Vaccinium macrocarpon HOM05D001176 ORTHO05D003317 3.3e-06 55.1 41 73.2
AagrBONN_evm.TU.Sc2ySwM_117.2586 Anthoceros agrestis HOM05D001176 ORTHO05D003317 4.3e-06 54.7 49 57.1
AUR62006725 Chenopodium quinoa HOM05D001176 ORTHO05D003317 4.3e-06 54.7 50 62.0
QL01p050622 Quercus lobata HOM05D001176 ORTHO05D003317 4.3e-06 54.7 41 68.3
MD04G1239800 Malus domestica HOM05D001176 ORTHO05D003317 5.6e-06 54.3 41 73.2
Mapoly0011s0135 Marchantia polymorpha HOM05D001176 ORTHO05D003317 5.6e-06 54.3 41 70.7
Hund21873 Selenicereus undatus HOM05D001176 ORTHO05D003317 5.6e-06 54.3 50 58.0
TPR.G29411 Trifolium pratense HOM05D001176 ORTHO05D003317 5.6e-06 54.3 41 70.7
BcaB04g18125 Brassica carinata HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
BcaC07g37726 Brassica carinata HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
A01p18860 Brassica napus HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
A08p10400 Brassica napus HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
BolC8t48109H Brassica oleracea HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
BraA01t01829Z Brassica rapa HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
BraA08t33039Z Brassica rapa HOM05D001176 ORTHO05D003317 7.3e-06 53.9 56 58.9
Carub.0001s3010 Capsella rubella HOM05D001176 ORTHO05D003317 7.3e-06 53.9 70 51.4
Lj2C52G4 Lonicera japonica HOM05D001176 ORTHO05D003317 7.3e-06 53.9 71 49.3
Medtr7g079440 Medicago truncatula HOM05D001176 ORTHO05D003317 7.3e-06 53.9 41 70.7


User provided reference genes

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