Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 7.3e-217 756.9 372 100.0
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.5e-100 367.9 302 65.9
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.0e-98 364.4 304 64.5
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.4e-98 364.0 300 65.0
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.3e-98 363.2 300 65.0
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 2.3e-98 363.2 343 60.3
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.8e-98 361.7 300 64.3
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.2e-97 360.9 300 64.0
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.5e-97 360.5 300 64.0
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 2.0e-97 360.1 308 63.6
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 2.0e-97 360.1 300 64.3
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 2.0e-97 360.1 300 63.7
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 3.4e-97 359.4 300 64.0
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 4.4e-97 359.0 300 63.3
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 4.4e-97 359.0 300 64.7
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 5.8e-97 358.6 300 64.0
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 5.8e-97 358.6 300 64.7
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 9.8e-97 357.8 300 63.7
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 1.3e-96 357.5 304 63.5
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.3e-96 357.5 300 64.3
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.3e-96 357.5 300 64.3
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.7e-96 357.1 300 63.3
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.7e-96 357.1 300 64.3
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 1.7e-96 357.1 300 64.3
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.9e-96 356.3 300 63.3
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.9e-96 356.3 300 63.7
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 3.7e-96 355.9 300 63.7
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.7e-96 355.9 300 64.0
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.7e-96 355.9 300 64.3
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 3.7e-96 355.9 299 63.5
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 4.9e-96 355.5 300 62.7
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 6.4e-96 355.1 300 64.0
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 8.3e-96 354.8 300 63.0
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.4e-95 354.0 300 63.3
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.9e-95 353.6 300 63.7
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.9e-95 353.6 300 63.3
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 2.4e-95 353.2 300 63.3
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 3.2e-95 352.8 301 62.5
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 5.4e-95 352.1 300 63.3
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 5.4e-95 352.1 300 63.3
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 7.0e-95 351.7 299 62.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 7.0e-95 351.7 299 62.9
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 7.0e-95 351.7 300 63.0
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 7.0e-95 351.7 300 63.3
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 9.2e-95 351.3 299 62.9
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 9.2e-95 351.3 300 63.3
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 1.2e-94 350.9 300 62.3
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 2.0e-94 350.1 300 61.7
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 2.0e-94 350.1 300 63.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 2.7e-94 349.7 300 62.0
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.7e-94 349.7 300 63.3
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 2.7e-94 349.7 299 61.9
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 3.5e-94 349.4 300 62.7
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.5e-94 349.4 300 63.0
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 3.5e-94 349.4 300 63.0
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.5e-94 349.4 299 62.5
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.6e-94 349.0 342 56.1
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 4.6e-94 349.0 300 61.0
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 4.6e-94 349.0 300 63.3
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 7.8e-94 348.2 300 61.0
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 7.8e-94 348.2 300 62.7
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 7.8e-94 348.2 300 62.7
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 7.8e-94 348.2 299 62.5
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.0e-93 347.8 300 62.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 1.3e-93 347.4 300 62.7
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.3e-93 347.4 300 62.0
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.7e-93 347.1 300 61.3
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.7e-93 347.1 303 62.7
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.7e-93 347.1 299 62.2
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 2.3e-93 346.7 300 63.3
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.9e-93 345.9 300 60.3
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.9e-93 345.9 300 60.3
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 5.0e-93 345.5 300 60.3
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 5.0e-93 345.5 301 62.8
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 6.6e-93 345.1 313 59.4
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 6.6e-93 345.1 300 62.3
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 8.6e-93 344.7 300 62.3
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 8.6e-93 344.7 301 62.5
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 8.6e-93 344.7 300 61.0
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.1e-92 344.4 300 61.3
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.9e-92 343.6 304 62.8
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.9e-92 343.6 300 60.7
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.5e-92 343.2 302 60.3
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 2.5e-92 343.2 300 63.0
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 3.3e-92 342.8 300 60.7
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 3.3e-92 342.8 300 61.0
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 4.3e-92 342.4 306 59.8
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 5.6e-92 342.0 300 60.7
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 5.6e-92 342.0 300 60.3
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 5.6e-92 342.0 300 59.3
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 7.3e-92 341.7 300 60.7
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 7.3e-92 341.7 301 61.5
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 7.3e-92 341.7 306 61.4
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.2e-91 340.9 300 60.3
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 1.2e-91 340.9 300 60.7
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.6e-91 340.5 300 60.7
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 1.6e-91 340.5 300 60.7
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.6e-91 340.5 299 60.9
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 2.1e-91 340.1 300 60.7
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 2.1e-91 340.1 300 60.3
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.1e-91 340.1 301 60.1
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.1e-91 340.1 301 60.1
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.1e-91 340.1 300 61.3
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 3.6e-91 339.3 300 60.7
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 4.7e-91 339.0 300 60.3
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 4.7e-91 339.0 300 60.3
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.4e-90 337.4 307 58.6
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.4e-90 337.4 308 59.7
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.8e-90 337.0 301 61.8
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.3e-90 336.7 300 60.0
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.3e-90 336.7 248 70.2
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.3e-90 336.7 300 61.0
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 4.0e-90 335.9 300 61.0
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 6.8e-90 335.1 340 55.6
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 8.9e-90 334.7 300 61.0
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 1.3e-88 330.9 300 58.7
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 2.9e-88 329.7 300 58.3
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 3.7e-88 329.3 300 58.3
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 8.3e-88 328.2 300 58.3
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 2.4e-87 326.6 295 59.0
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.2e-87 326.2 248 67.3
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 4.1e-87 325.9 333 56.2
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.0e-85 321.2 299 57.5
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.0e-85 321.2 313 57.2
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 2.3e-85 320.1 294 58.8
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.3e-85 320.1 283 61.5
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 3.9e-85 319.3 248 65.3
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 6.6e-85 318.5 297 56.9
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 8.6e-85 318.2 300 58.0
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 1.5e-84 317.4 300 59.0
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 2.5e-84 316.6 298 58.4
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 2.5e-84 316.6 283 60.4
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 7.3e-84 315.1 248 65.7
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.5e-81 307.4 301 55.1
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 2.6e-81 306.6 298 55.4
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 3.8e-80 302.8 311 54.3
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 3.8e-80 302.8 300 56.3
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 4.9e-80 302.4 247 63.2
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 5.4e-79 298.9 293 55.6
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 2.7e-78 296.6 296 54.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 3.5e-78 296.2 296 54.7
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 6.0e-78 295.4 281 58.4
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.1e-76 291.2 284 55.3
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 2.5e-76 290.0 273 59.3
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 9.0e-74 281.6 223 63.7
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 2.9e-72 276.6 222 64.9
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.1e-71 274.6 270 55.6
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 5.4e-71 272.3 308 47.7
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 2.3e-69 266.9 297 49.5
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 3.9e-69 266.2 289 53.6
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 3.9e-69 266.2 308 49.0
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.9e-68 263.8 248 60.1
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 3.6e-67 259.6 208 65.4
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 8.4e-64 248.4 141 85.1
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 1.1e-63 248.1 135 86.7
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.1e-62 243.8 299 49.5
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 2.1e-62 243.8 154 77.9
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.5e-60 236.9 168 72.0
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 3.3e-60 236.5 135 83.0
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 2.2e-56 223.8 285 47.7
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.6e-54 217.6 304 41.4
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-53 214.2 137 77.4
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.0e-53 213.4 220 53.6
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.2e-49 201.4 139 71.9
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 5.1e-45 186.0 105 81.0
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 1.8e-42 177.6 93 90.3
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 6.3e-35 152.5 185 50.3
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 5.0e-32 142.9 142 54.9
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.7e-27 127.9 74 81.1
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 4.1e-26 123.2 71 81.7
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 2.0e-25 120.9 102 62.7
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 7.7e-25 119.0 113 54.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.2e-24 117.5 73 75.3
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 3.3e-20 103.6 62 77.4
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 1.4e-18 98.2 81 64.2
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 9.1e-18 95.5 103 51.5
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 7.7e-17 92.4 48 83.3
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 7.2e-15 85.9 54 74.1
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.6e-14 84.7 101 49.5
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 2.0e-12 77.8 77 59.7
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 3.7e-11 73.6 47 66.0
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 1.1e-10 72.0 37 89.2
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 3.1e-10 70.5 58 62.1
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 7.0e-10 69.3 30 93.3


User provided reference genes

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