Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0001000 Rhododendron simsii HOM05D004045 ORTHO05D004923 6.9e-33 143.3 67 100.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 9.0e-09 63.2 34 85.3
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.0e-08 62.0 41 73.2
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.0e-08 62.0 41 73.2
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 3.4e-08 61.2 34 76.5
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.4e-08 61.2 34 76.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.4e-08 61.2 34 76.5
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.5e-08 60.8 41 70.7
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.0e-07 59.7 41 68.3
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.7e-07 58.9 32 84.4
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.7e-07 58.9 34 76.5
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.2e-07 58.5 34 76.5
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.2e-07 58.5 34 70.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 2.9e-07 58.2 34 73.5
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.9e-07 58.2 34 76.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.9e-07 58.2 34 76.5
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 3.8e-07 57.8 34 76.5
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.9e-07 57.4 34 73.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.9e-07 57.4 34 76.5
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.9e-07 57.4 34 76.5
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.9e-07 57.4 34 76.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 6.5e-07 57.0 34 76.5
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.5e-07 57.0 34 73.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.5e-07 57.0 34 73.5
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 6.5e-07 57.0 34 73.5
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 8.4e-07 56.6 34 76.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 8.4e-07 56.6 34 76.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.1e-06 56.2 34 73.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.1e-06 56.2 34 70.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.1e-06 56.2 45 57.8
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.4e-06 55.8 34 73.5
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-06 55.8 34 70.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.4e-06 55.8 33 72.7
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.9e-06 55.5 34 67.6
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.9e-06 55.5 34 67.6
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.9e-06 55.5 34 70.6
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.9e-06 55.5 34 67.6
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.5e-06 55.1 34 70.6
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.5e-06 55.1 34 70.6
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.5e-06 55.1 45 55.6
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 2.5e-06 55.1 34 70.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.2e-06 54.7 34 67.6
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 3.2e-06 54.7 34 67.6
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 3.2e-06 54.7 34 76.5
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 3.2e-06 54.7 32 75.0
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.2e-06 54.7 33 75.8
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 3.2e-06 54.7 34 70.6
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 3.2e-06 54.7 34 67.6
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 4.2e-06 54.3 34 70.6
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 4.2e-06 54.3 34 64.7
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 4.2e-06 54.3 31 77.4
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 4.2e-06 54.3 34 67.6
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 4.2e-06 54.3 34 67.6
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.2e-06 54.3 45 60.0
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.2e-06 54.3 41 63.4
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.2e-06 54.3 41 63.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 5.5e-06 53.9 34 61.8
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 5.5e-06 53.9 34 67.6
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 5.5e-06 53.9 34 70.6
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 5.5e-06 53.9 33 72.7
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 7.1e-06 53.5 31 74.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 70.6
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 67.6
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 67.6
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 64.7
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 64.7
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 64.7
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 67.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 7.1e-06 53.5 34 67.6
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 9.3e-06 53.1 34 67.6
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 9.3e-06 53.1 34 67.6
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 9.3e-06 53.1 34 67.6
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 9.3e-06 53.1 34 70.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 9.3e-06 53.1 45 53.3
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 9.3e-06 53.1 34 64.7


User provided reference genes

Program Settings