Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 4.7e-233 810.8 413 100.0
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 3.2e-165 585.5 365 82.7
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 2.4e-160 569.3 414 71.7
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 2.3e-147 526.2 407 68.1
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 5.5e-141 505.0 365 72.1
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 1.2e-127 460.7 415 58.6
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 2.1e-124 449.9 417 57.1
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 4.9e-121 438.7 412 56.8
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 1.8e-120 436.8 420 56.0
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 3.0e-118 429.5 418 56.0
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 1.4e-115 420.6 420 53.8
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 5.2e-115 418.7 413 55.7
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 9.8e-114 414.5 419 56.8
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 1.4e-112 410.6 416 53.1
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 2.4e-112 409.8 424 52.8
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 3.2e-112 409.5 419 54.2
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 3.2e-112 409.5 420 56.2
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 2.0e-111 406.8 420 53.3
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 2.0e-111 406.8 414 52.7
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 3.9e-110 402.5 425 53.9
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 6.6e-110 401.7 424 52.6
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 4.3e-109 399.1 422 51.7
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 4.3e-109 399.1 413 53.3
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 3.6e-108 396.0 424 52.4
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 6.2e-108 395.2 335 60.6
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 8.1e-108 394.8 412 52.9
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 4.0e-107 392.5 427 51.1
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 5.2e-107 392.1 421 53.2
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 8.9e-107 391.3 413 52.5
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 1.2e-106 391.0 366 56.0
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 1.2e-106 391.0 383 55.1
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 4.4e-106 389.0 364 56.3
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 5.8e-106 388.7 413 52.1
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 5.8e-106 388.7 389 53.5
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 9.8e-106 387.9 413 52.1
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.4e-104 384.0 412 51.9
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 2.4e-104 383.3 355 55.5
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 4.1e-104 382.5 415 51.1
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 5.4e-104 382.1 428 51.6
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 5.4e-104 382.1 364 55.8
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 7.1e-104 381.7 360 55.3
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 4.6e-103 379.0 419 50.4
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 7.8e-103 378.3 374 55.1
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 7.8e-103 378.3 374 55.1
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 1.0e-102 377.9 419 50.4
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 1.7e-102 377.1 419 50.1
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 3.9e-102 375.9 417 52.8
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 3.3e-101 372.9 391 52.7
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 3.3e-101 372.9 389 51.7
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 9.5e-101 371.3 381 53.5
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 2.8e-100 369.8 419 49.9
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 4.7e-100 369.0 315 65.1
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 1.1e-99 367.9 414 51.0
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 1.8e-99 367.1 404 48.8
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 8.9e-99 364.8 419 48.7
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 4.4e-98 362.5 362 53.9
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 7.6e-98 361.7 414 50.2
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 3.7e-97 359.4 414 48.6
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 4.1e-96 355.9 420 49.0
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 4.1e-96 355.9 414 48.1
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 6.0e-95 352.1 370 51.4
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 5.1e-94 349.0 424 47.2
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 1.1e-93 347.8 419 48.2
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 1.6e-92 344.0 417 47.7
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 3.6e-92 342.8 368 51.4
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 3.6e-92 342.8 414 46.9
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 4.0e-91 339.3 383 52.0
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 5.2e-91 339.0 414 46.4
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 1.5e-90 337.4 378 49.7
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 4.4e-90 335.9 406 48.0
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 5.8e-90 335.5 364 48.1
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 8.4e-89 331.6 419 46.8
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 4.2e-88 329.3 350 51.7
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 5.4e-88 328.9 374 49.2
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 1.0e-86 324.7 322 52.8
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 1.0e-86 324.7 330 54.8
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 1.0e-86 324.7 401 46.6
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 5.1e-86 322.4 388 49.0
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 1.1e-85 321.2 346 50.0
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 1.3e-84 317.8 366 50.0
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 1.3e-84 317.8 393 47.6
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 6.2e-84 315.5 410 46.1
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 1.1e-83 314.7 366 49.7
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.8e-83 313.9 241 69.3
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.8e-83 313.9 241 69.3
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 3.1e-83 313.2 409 45.7
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 4.5e-82 309.3 387 48.8
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 4.5e-82 309.3 387 48.8
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 5.8e-82 308.9 358 49.4
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 2.2e-81 307.0 384 47.4
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 3.9e-78 296.2 374 46.8
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.6e-71 274.2 424 41.0
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 3.3e-69 266.5 244 57.4
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 9.0e-67 258.5 304 49.7
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 1.0e-65 255.0 281 46.6
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 3.8e-65 253.1 404 39.9
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 8.4e-65 251.9 376 41.2
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 1.9e-64 250.8 302 48.3
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 5.9e-58 229.2 366 39.3
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.1e-56 224.9 240 53.3
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 3.2e-56 223.4 371 41.8
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 5.9e-50 202.6 126 78.6
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 5.9e-50 202.6 126 78.6
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.5e-45 188.0 261 41.4
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.7e-45 185.3 120 79.2
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 1.8e-38 164.5 322 35.7
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 8.8e-38 162.2 232 44.0
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 1.8e-35 154.5 178 48.9
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 6.5e-33 146.0 150 50.0
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 2.7e-31 140.6 448 28.1
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 1.8e-30 137.9 212 43.4
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 9.7e-29 132.1 156 49.4
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 3.1e-27 127.1 131 52.7
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 2.9e-25 120.6 314 30.9
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 6.5e-25 119.4 133 49.6
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 4.7e-23 113.2 336 29.8
MCO10G213 Micromonas commoda HOM05D006726 ORTHO05D008328 4.5e-10 70.1 271 26.6
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 1.0e-09 68.9 357 23.0
CBR_g4449 Chara braunii HOM05D006726 ORTHO05D008328 1.1e-08 65.5 153 32.7
Lalb_Chr13g0294981 Lupinus albus HOM05D006726 ORTHO05D008328 8.9e-06 55.8 63 52.4


User provided reference genes

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