Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 3.4e-286 987.6 507 100.0
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 5.1e-197 691.4 515 74.0
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 5.0e-184 648.3 443 76.1
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.8e-178 629.8 446 72.4
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.3e-173 612.8 445 73.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.7e-160 570.1 438 66.2
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.7e-153 546.2 490 58.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.9e-153 545.0 449 63.3
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 8.0e-150 534.6 441 62.8
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 8.0e-150 534.6 445 62.9
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 8.0e-150 534.6 446 61.7
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 6.8e-149 531.6 457 61.5
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.0e-148 530.0 447 62.2
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.6e-148 529.6 435 64.1
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.6e-148 529.6 446 62.1
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 3.4e-148 529.3 444 63.3
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.7e-148 528.5 472 59.7
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 7.5e-148 528.1 435 62.3
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 7.5e-148 528.1 461 61.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.8e-148 527.7 435 63.7
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 9.8e-148 527.7 450 62.4
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.2e-147 526.6 440 62.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-147 526.2 512 57.4
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 4.1e-146 522.3 457 60.6
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 9.1e-146 521.2 470 59.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.0e-145 520.0 448 60.5
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.5e-145 518.8 447 60.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 5.9e-145 518.5 448 60.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.7e-144 516.9 444 61.5
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.7e-144 516.9 438 64.2
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.9e-144 516.2 448 59.8
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 5.0e-144 515.4 443 61.9
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.6e-144 515.0 438 62.1
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.5e-143 513.8 437 61.8
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.5e-143 513.1 451 59.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.3e-143 512.7 439 62.0
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 3.3e-143 512.7 454 58.6
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.3e-143 512.7 444 61.7
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 5.5e-143 511.9 443 60.3
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-142 510.8 436 62.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.1e-142 510.0 451 60.3
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.0e-141 507.7 457 58.4
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.8e-141 506.9 445 60.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.8e-141 506.9 445 61.3
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.3e-141 506.5 436 61.7
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 3.0e-141 506.1 445 61.3
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 5.2e-141 505.4 439 62.6
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.9e-141 504.6 438 62.1
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 9.8e-140 501.1 435 60.7
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.7e-139 500.4 478 56.7
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.7e-139 500.4 498 55.2
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 4.9e-139 498.8 446 59.0
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.8e-138 496.9 448 59.8
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.1e-138 495.7 447 58.8
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.2e-138 494.6 443 61.2
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.0e-137 493.4 447 59.1
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.7e-137 493.0 438 59.1
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.7e-137 493.0 479 57.2
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 5.9e-137 491.9 453 55.8
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 5.9e-137 491.9 441 59.2
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.3e-136 490.7 430 58.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.7e-136 490.3 453 58.1
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.9e-136 489.6 446 57.4
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 2.9e-136 489.6 436 59.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.9e-136 489.2 443 57.6
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 3.9e-136 489.2 438 60.0
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.5e-135 486.5 454 55.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 7.3e-135 485.0 456 55.5
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 9.5e-135 484.6 456 55.3
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.7e-134 482.3 448 55.1
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 8.0e-134 481.5 463 54.6
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.0e-133 481.1 440 60.0
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.0e-133 481.1 437 55.8
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.4e-133 480.7 444 56.5
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 3.1e-133 479.6 444 56.5
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 3.1e-133 479.6 444 56.5
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 6.8e-133 478.4 448 54.7
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 8.9e-133 478.0 461 54.7
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.0e-132 476.9 441 55.8
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 7.5e-132 474.9 436 54.4
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 7.5e-132 474.9 436 54.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 9.8e-132 474.6 434 57.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.1e-130 471.1 450 55.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 4.1e-130 469.2 433 57.0
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.9e-127 460.3 391 61.6
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.6e-126 457.2 471 53.9
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 9.8e-124 448.0 439 55.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 8.3e-123 444.9 437 56.3
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.8e-117 427.2 403 55.3
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 7.6e-116 421.8 394 56.6
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.6e-113 412.5 368 60.1
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 4.6e-113 412.5 445 50.1
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.9e-112 409.5 432 52.3
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-110 404.4 429 54.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.1e-109 401.4 439 49.7
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.5e-108 397.5 455 50.5
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 7.1e-106 388.7 347 59.9
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.6e-105 387.5 334 59.3
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.1e-105 387.1 338 60.4
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.5e-105 386.3 341 60.1
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.0e-101 372.9 327 59.6
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 7.3e-95 352.1 257 71.2
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 8.1e-94 348.6 454 43.8
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.0e-92 344.0 303 60.4
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.9e-91 339.3 295 59.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 5.6e-87 325.9 300 55.0
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 5.3e-85 319.3 440 41.4
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.2e-84 318.2 288 54.9
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 2.2e-83 313.9 257 61.5
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 5.5e-82 309.3 348 50.6
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.3e-80 304.7 252 63.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 8.7e-80 302.0 535 39.3
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.5e-79 300.4 434 41.7
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.2e-76 291.6 235 64.7
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-76 291.6 347 51.0
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.3e-75 288.1 341 47.8
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.6e-73 281.2 283 52.7
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.1e-71 275.0 244 58.6
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.7e-65 253.8 339 46.6
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-65 253.8 265 51.3
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-65 253.8 368 43.8
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.6e-65 253.4 315 45.4
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-64 249.2 224 59.8
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-64 249.2 191 61.8
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.8e-64 248.8 218 60.6
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-63 248.4 241 53.9
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 6.3e-62 242.7 203 61.1
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-61 241.9 171 68.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.6e-60 237.3 214 58.4
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.0e-59 233.0 175 70.3
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-58 231.9 411 39.7
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-54 217.6 194 59.8
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 2.2e-54 217.6 196 57.7
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 1.9e-42 177.9 118 70.3
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-41 174.5 209 50.2
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 8.0e-41 172.6 184 54.3
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 4.4e-39 166.8 349 35.5
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 5.7e-39 166.4 163 55.2
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.8e-38 164.1 212 47.6
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.4e-32 145.2 145 55.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-32 143.3 131 63.4
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-32 142.9 131 62.6
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-30 137.9 131 60.3
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.4e-29 133.3 278 33.1
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.2e-28 132.1 101 70.3
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 4.3e-26 123.6 140 42.9
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.6e-25 121.7 119 63.9
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 2.1e-25 121.3 409 26.4
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-19 102.1 85 65.9
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.2e-17 95.5 178 38.8
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 6.2e-17 93.2 91 60.4
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-16 92.0 64 73.4
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-16 92.0 63 58.7
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-16 90.1 79 57.0
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.9e-16 89.4 88 62.5
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.4e-15 87.0 97 55.7
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-12 79.0 75 57.3
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 1.0e-11 75.9 87 42.5
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 6.6e-11 73.2 54 64.8
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.5e-10 72.0 101 44.6


User provided reference genes

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