Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.0e-37 157.1 88 100.0
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-36 156.0 88 98.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-18 95.1 70 78.6
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 4.8e-18 94.4 87 60.9
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-17 92.8 86 64.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.8e-17 92.4 83 68.7
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.4e-17 92.0 74 67.6
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.4e-17 92.0 77 64.9
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.4e-17 92.0 70 78.6
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.1e-17 91.3 70 71.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.1e-17 91.3 81 63.0
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.3e-17 90.9 86 62.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 5.3e-17 90.9 75 64.0
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.9e-17 90.5 82 73.2
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 6.9e-17 90.5 85 63.5
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 9.0e-17 90.1 69 75.4
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.2e-16 89.7 80 61.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.2e-16 89.7 80 61.2
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-16 89.7 79 65.8
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.2e-16 89.7 81 66.7
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.5e-16 89.4 82 72.0
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.0e-16 89.0 67 73.1
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.6e-16 88.6 76 71.1
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 3.4e-16 88.2 88 60.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 3.4e-16 88.2 80 67.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.4e-16 88.2 80 65.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.5e-16 87.8 77 62.3
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.5e-16 87.8 80 62.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 5.9e-16 87.4 77 68.8
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 5.9e-16 87.4 84 61.9
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.7e-16 87.0 86 62.8
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.0e-15 86.7 81 67.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.0e-15 86.7 81 67.9
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.0e-15 86.7 70 72.9
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.0e-15 86.7 80 71.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.0e-15 86.7 90 56.7
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.3e-15 86.3 80 62.5
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.7e-15 85.9 86 62.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.7e-15 85.9 70 72.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.7e-15 85.9 72 70.8
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-15 85.5 85 61.2
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 3.8e-15 84.7 83 59.0
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 3.8e-15 84.7 82 63.4
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.0e-15 84.3 72 69.4
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.5e-15 84.0 74 64.9
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 6.5e-15 84.0 84 63.1
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 8.5e-15 83.6 77 67.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.5e-15 83.6 77 66.2
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 8.5e-15 83.6 80 61.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 8.5e-15 83.6 67 67.2
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 8.5e-15 83.6 77 59.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-14 82.8 74 64.9
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.4e-14 82.8 88 62.5
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.4e-14 82.8 85 60.0
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.9e-14 82.4 84 56.0
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.9e-14 82.4 74 63.5
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.5e-14 82.0 75 70.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.2e-14 81.6 83 66.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.2e-14 81.6 78 66.7
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 3.2e-14 81.6 79 58.2
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.2e-14 81.6 92 57.6
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.2e-14 81.6 81 63.0
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.2e-14 81.6 75 61.3
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.2e-14 81.6 81 61.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.2e-14 81.3 85 57.6
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.2e-14 81.3 65 72.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 5.5e-14 80.9 81 60.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 5.5e-14 80.9 78 65.4
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.5e-14 80.9 91 56.0
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-13 79.7 91 56.0
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.2e-13 79.7 86 62.8
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.6e-13 79.3 60 75.0
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.6e-13 79.3 62 67.7
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.6e-13 79.3 81 60.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.6e-13 79.3 81 60.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.6e-13 79.3 81 60.5
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.6e-13 79.3 89 58.4
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.6e-13 79.3 77 64.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-13 79.0 80 62.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.7e-13 78.6 79 54.4
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 3.6e-13 78.2 78 56.4
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.6e-13 78.2 71 64.8
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.6e-13 77.8 67 67.2
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 4.6e-13 77.8 76 56.6
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 6.1e-13 77.4 74 60.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 6.1e-13 77.4 64 62.5
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 6.1e-13 77.4 77 59.7
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 6.1e-13 77.4 74 62.2
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-12 76.3 65 60.0
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.4e-12 76.3 70 64.3
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.4e-12 76.3 81 56.8
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.4e-12 76.3 74 63.5
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.8e-12 75.9 81 55.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.8e-12 75.9 74 63.5
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.3e-12 75.5 75 58.7
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 3.0e-12 75.1 84 53.6
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.0e-12 75.1 81 56.8
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.0e-12 75.1 64 67.2
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 3.0e-12 75.1 66 65.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.9e-12 74.7 75 58.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 3.9e-12 74.7 79 59.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.1e-12 74.3 87 52.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 6.7e-12 73.9 79 58.2
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 6.7e-12 73.9 79 58.2
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 6.7e-12 73.9 79 58.2
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 6.7e-12 73.9 64 64.1
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.1e-11 73.2 70 62.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.5e-11 72.8 79 55.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.5e-11 72.8 84 53.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.5e-11 72.8 81 55.6
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.5e-11 72.8 79 55.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.5e-11 72.8 84 53.6
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.5e-11 72.8 75 61.3
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.0e-11 72.4 71 60.6
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.5e-11 72.0 70 64.3
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.5e-11 72.0 72 58.3
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 3.3e-11 71.6 81 55.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.3e-11 71.6 84 53.6
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.3e-11 71.6 71 60.6
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 7.4e-11 70.5 71 56.3
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.4e-11 70.5 86 55.8
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 7.4e-11 70.5 69 65.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 9.7e-11 70.1 64 57.8
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 9.7e-11 70.1 73 60.3
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.3e-10 69.7 79 55.7
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.7e-10 69.3 71 60.6
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.2e-10 68.9 64 59.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.8e-10 68.6 79 54.4
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.8e-10 67.8 71 56.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 4.8e-10 67.8 62 61.3
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 6.3e-10 67.4 65 66.2
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 6.3e-10 67.4 65 66.2
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.1e-09 66.6 81 54.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.1e-09 66.6 65 63.1
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.4e-09 66.2 69 55.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.8e-09 65.9 89 50.6
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 4.1e-09 64.7 74 51.4
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 4.1e-09 64.7 66 62.1
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.1e-09 64.7 76 56.6
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 9.1e-09 63.5 66 56.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-08 63.2 73 56.2
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.5e-08 62.8 82 50.0
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.6e-08 62.0 93 46.2
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 3.4e-08 61.6 52 71.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.4e-08 61.6 86 48.8
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.0e-07 60.1 63 57.1
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 1.3e-07 59.7 50 72.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.3e-07 59.7 67 56.7
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.8e-07 58.2 75 46.7
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 6.5e-07 57.4 59 55.9
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.5e-07 57.0 86 47.7
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 1.4e-06 56.2 70 54.3
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 1.4e-06 56.2 42 76.2
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 9.4e-06 53.5 75 44.0


User provided reference genes

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