Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0215600 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.8e-166 588.6 307 100.0
Rhsim13G0215300 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.8e-97 359.4 311 66.2
Rhsim13G0215700 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.6e-92 342.0 313 67.7
Rhsim13G0215400 Rhododendron simsii HOM05D001192 ORTHO05D010160 8.5e-70 268.1 335 50.7
Rhsim13G0215200 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.3e-66 255.8 320 52.2
Rhsim13G0214400 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.8e-65 253.1 304 51.3
Rhsim13G0214700 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.3e-64 248.8 352 49.7
Rhsim13G0214200 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.0e-58 230.3 330 46.7
Rhsim13G0214600 Rhododendron simsii HOM05D001192 ORTHO05D010160 7.4e-58 228.4 351 44.7
Rhsim13G0214000 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.8e-57 225.7 313 47.0
Rhsim13G0214100 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.1e-56 224.6 323 47.7
Rhsim13G0213900 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.8e-56 223.8 324 46.3
Rhsim13G0214500 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.8e-56 223.8 330 45.5
Rhsim13G0213800 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.2e-53 212.6 350 41.7
Rhsim13G0214900 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.5e-53 212.2 307 45.0
Rhsim13G0213300 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.7e-52 209.9 319 47.6
Rhsim13G0215100 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.7e-52 209.9 303 44.9
Rhsim13G0213500 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.0e-51 208.0 353 42.8
Rhsim13G0213400 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.2e-51 205.7 338 42.6
Rhsim13G0213600 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.4e-48 197.6 317 43.5
Dinv15410 Davidia involucrata HOM05D001192 ORTHO05D010160 7.2e-29 132.1 349 31.8
Lsat_1_v5_gn_3_112881 Lactuca sativa HOM05D001192 ORTHO05D010160 1.0e-27 128.3 351 30.5
Dinv07797 Davidia involucrata HOM05D001192 ORTHO05D010160 2.3e-27 127.1 327 29.7
Hma1.2p1_0115F.1_g056030 Hydrangea macrophylla HOM05D001192 ORTHO05D010160 9.8e-26 121.7 351 29.6
Rhsim04G0137600 Rhododendron simsii HOM05D001192 ORTHO05D010160 6.3e-25 119.0 188 48.4
HanXRQChr03g0090711 Helianthus annuus HOM05D001192 ORTHO05D010160 7.0e-24 115.5 349 30.9
Lsat_1_v5_gn_3_113540 Lactuca sativa HOM05D001192 ORTHO05D010160 1.6e-23 114.4 316 29.7
Rhsim13G0113100 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.9e-23 112.5 172 48.8
Dinv42869 Davidia involucrata HOM05D001192 ORTHO05D010160 3.8e-22 109.8 337 32.0
Lsat_1_v5_gn_3_113520 Lactuca sativa HOM05D001192 ORTHO05D010160 3.8e-22 109.8 311 28.9
Dinv36189 Davidia involucrata HOM05D001192 ORTHO05D010160 6.6e-22 109.0 312 33.7
CSS0005311 Camellia sinensis var. sinensis HOM05D001192 ORTHO05D002290 1.1e-21 108.2 350 31.1
Lsat_1_v5_gn_3_112381 Lactuca sativa HOM05D001192 ORTHO05D010160 2.5e-21 107.1 322 27.6
Dinv43231 Davidia involucrata HOM05D001192 ORTHO05D010160 5.6e-21 105.9 332 31.6
Lsat_1_v5_gn_3_113900 Lactuca sativa HOM05D001192 ORTHO05D010160 7.3e-21 105.5 302 28.5
CSS0046911 Camellia sinensis var. sinensis HOM05D001192 ORTHO05D002290 9.5e-21 105.1 350 31.4
Dinv43230 Davidia involucrata HOM05D001192 ORTHO05D010160 9.5e-21 105.1 333 31.2
Cfa009836 Carpinus fangiana HOM05D001192 ORTHO05D002290 1.6e-20 104.4 340 28.2
Haze_23203 Corylus avellana HOM05D001192 ORTHO05D002290 2.1e-20 104.0 344 28.8
Lsat_1_v5_gn_3_112361 Lactuca sativa HOM05D001192 ORTHO05D010160 2.1e-20 104.0 308 29.9
Dinv07778 Davidia involucrata HOM05D001192 ORTHO05D017192 2.8e-20 103.6 256 35.5
Lsat_1_v5_gn_3_112301 Lactuca sativa HOM05D001192 ORTHO05D010160 4.7e-20 102.8 320 29.1
Dinv36165 Davidia involucrata HOM05D001192 ORTHO05D010160 8.9e-19 98.6 364 27.5
Lsat_1_v5_gn_3_113880 Lactuca sativa HOM05D001192 ORTHO05D010160 1.5e-18 97.8 321 27.4
Lsat_1_v5_gn_3_114020 Lactuca sativa HOM05D001192 ORTHO05D010160 2.6e-18 97.1 316 27.5
Manes.02G141400 Manihot esculenta HOM05D001192 ORTHO05D002290 4.4e-18 96.3 330 26.4
ECA238G4353 Erigeron canadensis HOM05D001192 ORTHO05D010160 9.8e-18 95.1 292 26.4
ECA247G3259 Erigeron canadensis HOM05D001192 ORTHO05D010160 1.7e-17 94.4 330 27.0
Lsat_1_v5_gn_3_112541 Lactuca sativa HOM05D001192 ORTHO05D010160 1.8e-16 90.9 317 26.8
Lsat_1_v5_gn_3_112621 Lactuca sativa HOM05D001192 ORTHO05D010160 2.4e-16 90.5 317 26.8
Lsat_1_v5_gn_3_113660 Lactuca sativa HOM05D001192 ORTHO05D010160 2.4e-16 90.5 301 27.9
Duzib168G1589 Durio zibethinus HOM05D001192 ORTHO05D002290 5.4e-16 89.4 335 26.3
Hma1.2p1_2007F.1_g310920 Hydrangea macrophylla HOM05D001192 ORTHO05D002290 7.0e-16 89.0 369 26.0
CiPaw.14G115000 Carya illinoinensis HOM05D001192 ORTHO05D002290 1.2e-15 88.2 336 26.2
Dinv08776 Davidia involucrata HOM05D001192 ORTHO05D002290 1.2e-15 88.2 308 28.6
Hma1.2p1_0115F.1_g056035 Hydrangea macrophylla HOM05D001192 ORTHO05D002290 1.2e-15 88.2 367 25.6
Thecc.09G244200 Theobroma cacao HOM05D001192 ORTHO05D002290 1.2e-15 88.2 357 26.9
Dinv42870 Davidia involucrata HOM05D001192 ORTHO05D010160 1.6e-15 87.8 308 30.5
Sabra09G0034900 Salix brachista HOM05D001192 ORTHO05D002290 2.0e-15 87.4 328 25.6
Potri.009G047600 Populus trichocarpa HOM05D001192 ORTHO05D002290 4.6e-15 86.3 337 27.3
ECA236G1843 Erigeron canadensis HOM05D001192 ORTHO05D010160 5.9e-15 85.9 288 26.4
Atru.chr3.2805 Acer truncatum HOM05D001192 ORTHO05D002290 1.0e-14 85.1 340 26.2
Lsat_1_v5_gn_5_65001 Lactuca sativa HOM05D001192 ORTHO05D010160 1.7e-14 84.3 368 26.6
CiPaw.13G152500 Carya illinoinensis HOM05D001192 ORTHO05D002290 2.3e-14 84.0 351 26.2
Ciclev10015553m.g Citrus clementina HOM05D001192 ORTHO05D002290 3.9e-14 83.2 340 25.3
Cc01_g05700 Coffea canephora HOM05D001192 ORTHO05D002290 3.9e-14 83.2 336 26.5
CANSAT35G0784 Cannabis sativa HOM05D001192 ORTHO05D002290 8.6e-14 82.0 331 25.4
COL.COLO4_07228 Corchorus olitorius HOM05D001192 ORTHO05D002290 8.6e-14 82.0 338 26.0
ECA247G3046 Erigeron canadensis HOM05D001192 ORTHO05D010160 1.1e-13 81.6 334 24.0
DCAR_018591 Daucus carota HOM05D001192 ORTHO05D010160 1.5e-13 81.3 309 26.5
ClCG03G012870 Citrullus lanatus HOM05D001192 ORTHO05D002290 1.9e-13 80.9 345 27.0
Sed0004813 Sechium edule HOM05D001192 ORTHO05D002290 1.9e-13 80.9 357 26.9
GSVIVG01037246001 Vitis vinifera HOM05D001192 ORTHO05D002290 1.9e-13 80.9 333 27.6
QL01p017691 Quercus lobata HOM05D001192 ORTHO05D002290 7.3e-13 79.0 351 26.8
Gorai.006G125400 Gossypium raimondii HOM05D001192 ORTHO05D002290 9.5e-13 78.6 345 27.0
Dinv07772 Davidia involucrata HOM05D001192 ORTHO05D010160 4.7e-12 76.3 240 30.0
ECA247G3492 Erigeron canadensis HOM05D001192 ORTHO05D010160 4.7e-12 76.3 323 25.4
Rhsim13G0213000 Rhododendron simsii HOM05D000073 ORTHO05D017192 4.7e-12 76.3 293 27.3
Dinv07795 Davidia involucrata HOM05D001192 ORTHO05D010160 8.0e-12 75.5 209 28.7
ATR1098G127 Amborella trichopoda HOM05D001192 ORTHO05D002290 1.0e-11 75.1 299 27.1
Gohir.A09G111000 Gossypium hirsutum HOM05D001192 ORTHO05D002290 1.8e-11 74.3 345 26.1
ATR0787G224 Amborella trichopoda HOM05D001192 ORTHO05D002290 5.2e-11 72.8 302 25.5
Gohir.D09G107700 Gossypium hirsutum HOM05D001192 ORTHO05D002290 6.8e-11 72.4 345 26.4
QL08p013359 Quercus lobata HOM05D001192 ORTHO05D002290 6.8e-11 72.4 334 26.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 8.9e-11 72.0 342 23.4
Rhsim04G0137500 Rhododendron simsii HOM05D007742 ORTHO05D010160 8.9e-11 72.0 109 45.0
SHI24848 Sapria himalayana HOM05D001192 ORTHO05D002290 8.9e-11 72.0 343 25.4
PGR102G1754 Punica granatum HOM05D001192 ORTHO05D002290 1.5e-10 71.2 298 27.5
HanXRQChr15g0482061 Helianthus annuus HOM05D001192 ORTHO05D002290 2.0e-10 70.9 289 27.7
SalBow6G7265 Salvia bowleyana HOM05D001192 ORTHO05D002290 2.0e-10 70.9 348 23.3
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 3.4e-10 70.1 324 25.3
Mapoly0115s0056 Marchantia polymorpha HOM05D001192 ORTHO05D002290 4.4e-10 69.7 332 26.5
EL10Ac4g10119 Beta vulgaris HOM05D001192 ORTHO05D002290 5.8e-10 69.3 367 22.1
Lsat_1_v5_gn_2_25220 Lactuca sativa HOM05D001192 ORTHO05D002290 5.8e-10 69.3 358 23.5
Rhsim13G0207100 Rhododendron simsii HOM05D021550 ORTHO05D023100 5.8e-10 69.3 308 25.0
CsaV3_1G043180 Cucumis sativus L. HOM05D001192 ORTHO05D002290 7.5e-10 68.9 359 25.3
SGA_v2.0_scaffold223G42815 Striga asiatica HOM05D001192 ORTHO05D002290 7.5e-10 68.9 308 24.4
MBI13_g30856_MAGBIO Magnolia biondii HOM05D001192 ORTHO05D002290 9.8e-10 68.6 328 24.4
ECA240G4265 Erigeron canadensis HOM05D001192 ORTHO05D010160 1.7e-09 67.8 121 36.4
HPP92_006659 Vanilla planifolia HOM05D001192 ORTHO05D002290 1.7e-09 67.8 333 24.6
EL10Ac4g10169 Beta vulgaris HOM05D001192 ORTHO05D002290 2.2e-09 67.4 367 21.8
Cc02_g14040 Coffea canephora HOM05D040560 ORTHO05D010160 2.2e-09 67.4 298 27.5
HanXRQChr17g0542411 Helianthus annuus HOM05D001192 ORTHO05D002290 2.2e-09 67.4 336 24.4
CARHR225180 Cardamine hirsuta HOM05D001192 ORTHO05D002290 2.9e-09 67.0 351 24.2
Eucgr.B03721 Eucalyptus grandis HOM05D001192 ORTHO05D002290 2.9e-09 67.0 346 24.6
Sc09g0000970 Simmondsia chinensis HOM05D001192 ORTHO05D002290 2.9e-09 67.0 337 22.6
VMungo0540G0846 Vigna mungo HOM05D001192 ORTHO05D002290 2.9e-09 67.0 332 24.4
GSVIVG01021526001 Vitis vinifera HOM05D001192 ORTHO05D002290 2.9e-09 67.0 336 24.7
Aa31LG9G6740 Aethionema arabicum HOM05D001192 ORTHO05D002290 3.7e-09 66.6 352 23.6
Potri.002G094600 Populus trichocarpa HOM05D001192 ORTHO05D008198 3.7e-09 66.6 324 27.2
ATR0307G014 Amborella trichopoda HOM05D001192 ORTHO05D002290 4.9e-09 66.2 328 25.6
MELO3C015149.2 Cucumis melo HOM05D001192 ORTHO05D002290 4.9e-09 66.2 354 24.6
Nitab4.5_0000718g0110 Nicotiana tabacum HOM05D001192 ORTHO05D002290 6.4e-09 65.9 354 22.9
Oeu031295.1 Olea europaea HOM05D001192 ORTHO05D002290 6.4e-09 65.9 286 28.0
CDE05G3417 Ceratophyllum demersum HOM05D001192 ORTHO05D002290 8.3e-09 65.5 299 24.4
Lsat_1_v5_gn_3_111980 Lactuca sativa HOM05D001192 ORTHO05D002290 8.3e-09 65.5 318 22.6
PGSC0003DMG400046726 Solanum tuberosum HOM05D001192 ORTHO05D002290 8.3e-09 65.5 341 24.6
Lj6g0027783 Lotus japonicus HOM05D001192 ORTHO05D002290 1.1e-08 65.1 321 24.0
Phvul.006G166500 Phaseolus vulgaris HOM05D001192 ORTHO05D002290 1.1e-08 65.1 325 23.4
A09p42560 Brassica napus HOM05D001192 ORTHO05D008198 1.4e-08 64.7 327 26.6
MBI19_g28099_MAGBIO Magnolia biondii HOM05D001192 ORTHO05D002290 1.4e-08 64.7 329 24.6
Actinidia16367 Actinidia chinensis HOM05D000073 ORTHO05D000033 1.9e-08 64.3 365 22.2
ECA233G0757 Erigeron canadensis HOM05D001192 ORTHO05D010160 1.9e-08 64.3 226 27.0
BraA09t39731Z Brassica rapa HOM05D001192 ORTHO05D008198 2.4e-08 63.9 327 26.6
AUR62030153 Chenopodium quinoa HOM05D001192 ORTHO05D002290 2.4e-08 63.9 351 23.6
Potri.005G166500 Populus trichocarpa HOM05D001192 ORTHO05D008198 4.1e-08 63.2 314 26.4
HPP92_000653 Vanilla planifolia HOM05D001192 ORTHO05D002290 4.1e-08 63.2 334 24.6
CDE01G0442 Ceratophyllum demersum HOM05D001192 ORTHO05D002290 5.4e-08 62.8 343 23.6
BcaC03g16835 Brassica carinata HOM05D001192 ORTHO05D002290 7.0e-08 62.4 327 23.5
ECA247G0263 Erigeron canadensis HOM05D001192 ORTHO05D010160 7.0e-08 62.4 221 24.9
Nn1g05320 Nelumbo nucifera HOM05D001192 ORTHO05D008198 7.0e-08 62.4 339 26.3
SEGI_21453 Sequoiadendron giganteum HOM05D001192 ORTHO05D002290 7.0e-08 62.4 340 23.2
Dinv43229 Davidia involucrata HOM05D001192 ORTHO05D010160 9.2e-08 62.0 178 32.0
HPP92_000693 Vanilla planifolia HOM05D001192 ORTHO05D002290 9.2e-08 62.0 334 24.6
BcaC05g26149 Brassica carinata HOM05D001192 ORTHO05D008198 1.2e-07 61.6 325 24.3
C05p21340 Brassica napus HOM05D001192 ORTHO05D008198 1.2e-07 61.6 325 24.3
BolC5t30832H Brassica oleracea HOM05D001192 ORTHO05D008198 1.2e-07 61.6 325 24.3
Dinv07782 Davidia involucrata HOM05D001192 ORTHO05D017192 1.2e-07 61.6 215 29.3
HanXRQChr03g0090251 Helianthus annuus HOM05D001192 ORTHO05D010160 1.2e-07 61.6 320 22.5
SalBow8G4972 Salvia bowleyana HOM05D001192 ORTHO05D002290 1.2e-07 61.6 352 23.3
SEGI_34774 Sequoiadendron giganteum HOM05D001192 ORTHO05D002290 2.0e-07 60.8 311 24.4
MSTRG.21355 Avicennia marina HOM05D001192 ORTHO05D002290 2.7e-07 60.5 341 24.6
Os05g0490300 Oryza sativa ssp. japonica HOM05D001192 ORTHO05D002290 2.7e-07 60.5 334 26.0
Duzib168G0794 Durio zibethinus HOM05D001192 ORTHO05D002290 3.5e-07 60.1 233 24.9
PSO384G4114 Papaver somniferum HOM05D001192 ORTHO05D002290 3.5e-07 60.1 328 24.4
SMO205G0014 Selaginella moellendorffii HOM05D001192 ORTHO05D002290 3.5e-07 60.1 326 25.2
Os01g0812200 Oryza sativa ssp. japonica HOM05D001192 ORTHO05D002290 4.6e-07 59.7 322 24.8
ECA233G5340 Erigeron canadensis HOM05D020282 ORTHO05D010160 6.0e-07 59.3 244 23.8
Nitab4.5_0009172g0030 Nicotiana tabacum HOM05D001192 ORTHO05D002290 6.0e-07 59.3 248 23.8
HPP92_028711 Vanilla planifolia HOM05D001192 ORTHO05D002290 6.0e-07 59.3 283 25.4
BolC1t01202H Brassica oleracea HOM05D001192 ORTHO05D002290 7.8e-07 58.9 347 25.1
Migut.D00647 Erythranthe guttata HOM05D001192 ORTHO05D002290 7.8e-07 58.9 294 22.4
Rhsim11G0033900 Rhododendron simsii HOM05D021550 ORTHO05D023100 7.8e-07 58.9 304 25.0
AT1G22220 Arabidopsis thaliana HOM05D001192 ORTHO05D008198 1.0e-06 58.5 317 24.9
Thhalv10010014m.g Eutrema salsugineum HOM05D001192 ORTHO05D008198 1.0e-06 58.5 328 23.5
SEGI_39800 Sequoiadendron giganteum HOM05D001192 ORTHO05D002290 1.3e-06 58.2 350 23.4
Dinv07780 Davidia involucrata HOM05D001192 ORTHO05D017192 1.7e-06 57.8 242 27.7
PSO339G3624 Papaver somniferum HOM05D001192 ORTHO05D002290 1.7e-06 57.8 329 23.4
BraA02t07996Z Brassica rapa HOM05D001192 ORTHO05D002290 2.3e-06 57.4 333 23.4
COL.COLO4_37556 Corchorus olitorius HOM05D000280 ORTHO05D158428 2.3e-06 57.4 290 26.6
MD15G1366300 Malus domestica HOM05D001192 ORTHO05D008198 2.3e-06 57.4 322 26.7
Rhsim02G0242400 Rhododendron simsii HOM05D000073 ORTHO05D017192 2.3e-06 57.4 53 45.3
Pp3c10_10820 Physcomitrium patens HOM05D001192 ORTHO05D002290 3.0e-06 57.0 162 30.2
Pp3c14_16580 Physcomitrium patens HOM05D001192 ORTHO05D002290 3.0e-06 57.0 162 29.0
Zm00001eb291260 Zea mays HOM05D001192 ORTHO05D002290 3.0e-06 57.0 334 25.1
BcaNung00007 Brassica carinata HOM05D001192 ORTHO05D002290 3.9e-06 56.6 348 22.7
C02p47130 Brassica napus HOM05D001192 ORTHO05D002290 3.9e-06 56.6 335 23.3
BolC2t10759H Brassica oleracea HOM05D001192 ORTHO05D002290 3.9e-06 56.6 335 23.3
Nn6g31510 Nelumbo nucifera HOM05D001192 ORTHO05D002290 3.9e-06 56.6 305 23.3
SMO142G0063 Selaginella moellendorffii HOM05D001192 ORTHO05D002290 3.9e-06 56.6 301 23.9
BcaC05g27045 Brassica carinata HOM05D001192 ORTHO05D002290 6.6e-06 55.8 340 22.4
C05p29040 Brassica napus HOM05D001192 ORTHO05D002290 6.6e-06 55.8 340 22.4
BolC5t31634H Brassica oleracea HOM05D001192 ORTHO05D002290 6.6e-06 55.8 340 22.4
Dinv07794 Davidia involucrata HOM05D001192 ORTHO05D181744 8.6e-06 55.5 337 19.9


User provided reference genes

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