Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0214400 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.1e-173 611.3 307 100.0
Rhsim13G0214700 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.1e-75 285.4 345 49.6
Rhsim13G0214200 Rhododendron simsii HOM05D001192 ORTHO05D010160 6.7e-75 285.0 330 52.7
Rhsim13G0214600 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.7e-74 282.0 337 50.4
Rhsim13G0214500 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.1e-72 275.8 336 51.2
Rhsim13G0215400 Rhododendron simsii HOM05D001192 ORTHO05D010160 3.6e-68 262.7 336 47.3
Rhsim13G0213900 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.3e-67 260.0 323 48.9
Rhsim13G0215700 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.3e-66 255.8 295 50.8
Rhsim13G0215600 Rhododendron simsii HOM05D001192 ORTHO05D010160 6.3e-65 251.9 304 51.3
Rhsim13G0214900 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.4e-64 250.8 306 48.0
Rhsim13G0215100 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.3e-64 248.8 296 49.3
Rhsim13G0215300 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.5e-63 245.7 306 49.3
Rhsim13G0214000 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.0e-62 242.3 297 50.5
Rhsim13G0213300 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.9e-61 240.4 323 45.5
Rhsim13G0214100 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.7e-60 236.5 308 47.7
Rhsim13G0215200 Rhododendron simsii HOM05D001192 ORTHO05D010160 3.6e-60 236.1 323 46.4
Rhsim13G0213800 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.7e-58 228.8 342 44.7
Rhsim13G0213500 Rhododendron simsii HOM05D001192 ORTHO05D010160 8.2e-57 224.9 340 44.4
Rhsim13G0213600 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.6e-55 219.9 332 43.7
Rhsim13G0213400 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.4e-48 197.6 340 40.6
HanXRQChr03g0090711 Helianthus annuus HOM05D001192 ORTHO05D010160 3.5e-31 139.8 350 30.6
Lsat_1_v5_gn_3_113540 Lactuca sativa HOM05D001192 ORTHO05D010160 8.0e-28 128.6 310 31.9
Rhsim13G0113100 Rhododendron simsii HOM05D001192 ORTHO05D010160 8.0e-28 128.6 170 48.8
Dinv42869 Davidia involucrata HOM05D001192 ORTHO05D010160 2.3e-27 127.1 332 32.2
Dinv43230 Davidia involucrata HOM05D001192 ORTHO05D010160 5.2e-27 125.9 343 31.8
Dinv43231 Davidia involucrata HOM05D001192 ORTHO05D010160 4.4e-26 122.9 318 31.8
Dinv07797 Davidia involucrata HOM05D001192 ORTHO05D010160 2.2e-25 120.6 310 33.2
Lsat_1_v5_gn_3_112881 Lactuca sativa HOM05D001192 ORTHO05D010160 1.4e-24 117.9 361 27.4
Lsat_1_v5_gn_3_112381 Lactuca sativa HOM05D001192 ORTHO05D010160 3.5e-23 113.2 325 32.9
Lsat_1_v5_gn_3_112301 Lactuca sativa HOM05D001192 ORTHO05D010160 3.8e-22 109.8 328 30.5
Dinv42870 Davidia involucrata HOM05D001192 ORTHO05D010160 6.6e-22 109.0 304 31.9
Lsat_1_v5_gn_3_113660 Lactuca sativa HOM05D001192 ORTHO05D010160 1.1e-21 108.2 302 31.5
Lsat_1_v5_gn_3_113880 Lactuca sativa HOM05D001192 ORTHO05D010160 1.1e-21 108.2 301 29.2
Dinv15410 Davidia involucrata HOM05D001192 ORTHO05D010160 2.5e-21 107.1 352 29.0
Rhsim04G0137600 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.5e-21 107.1 178 43.8
Dinv36189 Davidia involucrata HOM05D001192 ORTHO05D010160 3.3e-21 106.7 314 33.8
Lsat_1_v5_gn_3_113520 Lactuca sativa HOM05D001192 ORTHO05D010160 1.2e-20 104.8 310 29.0
Lsat_1_v5_gn_3_113900 Lactuca sativa HOM05D001192 ORTHO05D010160 3.6e-20 103.2 299 32.1
Lsat_1_v5_gn_3_112541 Lactuca sativa HOM05D001192 ORTHO05D010160 4.7e-20 102.8 308 28.9
Lsat_1_v5_gn_3_114020 Lactuca sativa HOM05D001192 ORTHO05D010160 4.7e-20 102.8 309 29.8
Rhsim10G0071400 Rhododendron simsii HOM05D000034 ORTHO05D000037 5.2e-19 99.4 55 90.9
Lsat_1_v5_gn_5_65001 Lactuca sativa HOM05D001192 ORTHO05D010160 1.2e-18 98.2 358 27.7
Hma1.2p1_0115F.1_g056030 Hydrangea macrophylla HOM05D001192 ORTHO05D010160 5.7e-18 95.9 359 27.0
Lsat_1_v5_gn_3_112621 Lactuca sativa HOM05D001192 ORTHO05D010160 7.5e-18 95.5 308 27.9
Dinv36165 Davidia involucrata HOM05D001192 ORTHO05D010160 1.3e-17 94.7 360 26.7
Dinv08776 Davidia involucrata HOM05D001192 ORTHO05D002290 1.7e-17 94.4 311 29.6
Lsat_1_v5_gn_3_112361 Lactuca sativa HOM05D001192 ORTHO05D010160 2.2e-17 94.0 323 27.6
Dinv07778 Davidia involucrata HOM05D001192 ORTHO05D017192 3.7e-17 93.2 229 35.4
Haze_23203 Corylus avellana HOM05D001192 ORTHO05D002290 4.1e-16 89.7 339 28.6
Cfa009836 Carpinus fangiana HOM05D001192 ORTHO05D002290 7.0e-16 89.0 341 28.4
PGR102G1754 Punica granatum HOM05D001192 ORTHO05D002290 9.2e-16 88.6 298 29.5
Manes.02G141400 Manihot esculenta HOM05D001192 ORTHO05D002290 2.7e-15 87.0 328 26.2
ECA238G4353 Erigeron canadensis HOM05D001192 ORTHO05D010160 1.7e-14 84.3 294 27.2
CANSAT35G0784 Cannabis sativa HOM05D001192 ORTHO05D002290 3.0e-14 83.6 297 25.6
Ciclev10015553m.g Citrus clementina HOM05D001192 ORTHO05D002290 5.0e-14 82.8 292 27.1
ECA236G1843 Erigeron canadensis HOM05D001192 ORTHO05D010160 8.6e-14 82.0 279 29.4
Eucgr.B03721 Eucalyptus grandis HOM05D001192 ORTHO05D002290 1.1e-13 81.6 330 29.7
Lsat_1_v5_gn_3_111980 Lactuca sativa HOM05D001192 ORTHO05D002290 1.1e-13 81.6 322 26.4
CSS0005311 Camellia sinensis var. sinensis HOM05D001192 ORTHO05D002290 1.9e-13 80.9 350 25.1
Potri.009G047600 Populus trichocarpa HOM05D001192 ORTHO05D002290 1.9e-13 80.9 326 26.4
Atru.chr3.2805 Acer truncatum HOM05D001192 ORTHO05D002290 2.5e-13 80.5 333 27.9
CSS0046911 Camellia sinensis var. sinensis HOM05D001192 ORTHO05D002290 3.3e-13 80.1 348 25.0
CiPaw.14G115000 Carya illinoinensis HOM05D001192 ORTHO05D002290 3.3e-13 80.1 341 27.6
COL.COLO4_07228 Corchorus olitorius HOM05D001192 ORTHO05D002290 3.3e-13 80.1 300 27.3
Thecc.09G244200 Theobroma cacao HOM05D001192 ORTHO05D002290 4.3e-13 79.7 339 28.3
ClCG03G012870 Citrullus lanatus HOM05D001192 ORTHO05D002290 5.6e-13 79.3 328 27.7
Rhsim04G0137500 Rhododendron simsii HOM05D007742 ORTHO05D010160 5.6e-13 79.3 113 43.4
Duzib168G1589 Durio zibethinus HOM05D001192 ORTHO05D002290 9.5e-13 78.6 333 25.5
QL08p013359 Quercus lobata HOM05D001192 ORTHO05D002290 9.5e-13 78.6 326 27.6
Gorai.006G125400 Gossypium raimondii HOM05D001192 ORTHO05D002290 1.2e-12 78.2 341 26.1
Sabra09G0034900 Salix brachista HOM05D001192 ORTHO05D002290 1.2e-12 78.2 289 25.3
ECA240G4265 Erigeron canadensis HOM05D001192 ORTHO05D010160 2.8e-12 77.0 133 37.6
QL01p017691 Quercus lobata HOM05D001192 ORTHO05D002290 2.8e-12 77.0 344 26.2
Actinidia16367 Actinidia chinensis HOM05D000073 ORTHO05D000033 3.6e-12 76.6 342 26.3
CiPaw.13G152500 Carya illinoinensis HOM05D001192 ORTHO05D002290 4.7e-12 76.3 349 26.4
Hma1.2p1_0115F.1_g056035 Hydrangea macrophylla HOM05D001192 ORTHO05D002290 8.0e-12 75.5 319 27.0
Dinv07795 Davidia involucrata HOM05D001192 ORTHO05D010160 1.0e-11 75.1 208 31.7
Gohir.A09G111000 Gossypium hirsutum HOM05D001192 ORTHO05D002290 1.0e-11 75.1 333 25.8
Cc02_g14040 Coffea canephora HOM05D040560 ORTHO05D010160 1.4e-11 74.7 299 28.1
GSVIVG01037246001 Vitis vinifera HOM05D001192 ORTHO05D002290 1.8e-11 74.3 341 24.9
EL10Ac4g10119 Beta vulgaris HOM05D001192 ORTHO05D002290 2.3e-11 73.9 364 24.5
HanXRQChr03g0090251 Helianthus annuus HOM05D001192 ORTHO05D010160 2.3e-11 73.9 321 24.9
HanXRQChr15g0482061 Helianthus annuus HOM05D001192 ORTHO05D002290 4.0e-11 73.2 282 27.7
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 5.2e-11 72.8 356 23.9
EL10Ac4g10169 Beta vulgaris HOM05D001192 ORTHO05D002290 8.9e-11 72.0 364 24.2
Gohir.D09G107700 Gossypium hirsutum HOM05D001192 ORTHO05D002290 8.9e-11 72.0 341 25.5
Hma1.2p1_2007F.1_g310920 Hydrangea macrophylla HOM05D001192 ORTHO05D002290 8.9e-11 72.0 322 26.7
Zm00001eb352260 Zea mays HOM05D001192 ORTHO05D002290 1.2e-10 71.6 337 26.7
HanXRQChr17g0542411 Helianthus annuus HOM05D001192 ORTHO05D002290 2.6e-10 70.5 293 27.6
Rhsim13G0213000 Rhododendron simsii HOM05D000073 ORTHO05D017192 3.4e-10 70.1 279 28.3
GSVIVG01021526001 Vitis vinifera HOM05D001192 ORTHO05D002290 3.4e-10 70.1 336 26.5
CsaV3_1G043180 Cucumis sativus L. HOM05D001192 ORTHO05D002290 5.8e-10 69.3 349 24.4
MELO3C015149.2 Cucumis melo HOM05D001192 ORTHO05D002290 7.5e-10 68.9 338 25.7
ECA247G3046 Erigeron canadensis HOM05D001192 ORTHO05D010160 7.5e-10 68.9 332 25.3
ECA247G3259 Erigeron canadensis HOM05D001192 ORTHO05D010160 7.5e-10 68.9 326 25.5
Zm00001eb291260 Zea mays HOM05D001192 ORTHO05D002290 1.7e-09 67.8 337 26.1
SalBow6G7265 Salvia bowleyana HOM05D001192 ORTHO05D002290 2.2e-09 67.4 331 24.5
Sed0004813 Sechium edule HOM05D001192 ORTHO05D002290 2.2e-09 67.4 298 27.2
TAR381G0898 Trochodendron aralioides HOM05D001192 ORTHO05D008198 3.7e-09 66.6 309 25.2
Lju9295C0T5 Lonicera japonica HOM05D001192 ORTHO05D002290 4.9e-09 66.2 371 25.6
SEGI_34774 Sequoiadendron giganteum HOM05D001192 ORTHO05D002290 6.4e-09 65.9 310 27.1
A09p36340 Brassica napus HOM05D001192 ORTHO05D002290 8.3e-09 65.5 363 24.2
BraA09t39158Z Brassica rapa HOM05D001192 ORTHO05D002290 8.3e-09 65.5 363 24.2
ECA233G0757 Erigeron canadensis HOM05D001192 ORTHO05D010160 8.3e-09 65.5 271 28.0
MBI16_g23778_MAGBIO Magnolia biondii HOM05D001192 ORTHO05D002290 1.1e-08 65.1 321 24.6
Potri.005G166500 Populus trichocarpa HOM05D001192 ORTHO05D008198 1.1e-08 65.1 314 27.7
BcaC05g27045 Brassica carinata HOM05D001192 ORTHO05D002290 1.9e-08 64.3 356 23.6
C05p29040 Brassica napus HOM05D001192 ORTHO05D002290 1.9e-08 64.3 356 23.6
BolC5t31634H Brassica oleracea HOM05D001192 ORTHO05D002290 1.9e-08 64.3 356 23.6
Lsat_1_v5_gn_2_25220 Lactuca sativa HOM05D001192 ORTHO05D002290 2.4e-08 63.9 354 22.9
Oeu031295.1 Olea europaea HOM05D001192 ORTHO05D002290 2.4e-08 63.9 291 26.8
ATR1098G127 Amborella trichopoda HOM05D001192 ORTHO05D002290 3.2e-08 63.5 339 26.0
BcaC03g16835 Brassica carinata HOM05D001192 ORTHO05D002290 3.2e-08 63.5 355 25.1
C02p47130 Brassica napus HOM05D001192 ORTHO05D002290 4.1e-08 63.2 364 24.7
BolC2t10759H Brassica oleracea HOM05D001192 ORTHO05D002290 4.1e-08 63.2 364 24.7
Cc01_g05700 Coffea canephora HOM05D001192 ORTHO05D002290 7.0e-08 62.4 332 24.7
SEGI_21453 Sequoiadendron giganteum HOM05D001192 ORTHO05D002290 7.0e-08 62.4 342 25.4
Nitab4.5_0000718g0110 Nicotiana tabacum HOM05D001192 ORTHO05D002290 9.2e-08 62.0 318 24.5
DCAR_018591 Daucus carota HOM05D001192 ORTHO05D010160 1.2e-07 61.6 287 27.2
SMO118G0548 Selaginella moellendorffii HOM05D001192 ORTHO05D002290 1.2e-07 61.6 298 26.5
SGA_v2.0_scaffold223G42815 Striga asiatica HOM05D001192 ORTHO05D002290 1.2e-07 61.6 335 25.1
MBI13_g30856_MAGBIO Magnolia biondii HOM05D001192 ORTHO05D002290 1.6e-07 61.2 335 26.0
Os01g0812200 Oryza sativa ssp. japonica HOM05D001192 ORTHO05D002290 1.6e-07 61.2 335 25.7
PSO384G4114 Papaver somniferum HOM05D001192 ORTHO05D002290 1.6e-07 61.2 335 25.7
Rhsim02G0242400 Rhododendron simsii HOM05D000073 ORTHO05D017192 1.6e-07 61.2 223 27.8
CDE02G2946 Ceratophyllum demersum HOM05D001192 ORTHO05D002290 2.0e-07 60.8 347 24.2
AUR62030153 Chenopodium quinoa HOM05D001192 ORTHO05D002290 2.0e-07 60.8 361 24.4
PSO339G3624 Papaver somniferum HOM05D001192 ORTHO05D002290 2.0e-07 60.8 332 25.3
ATR0307G014 Amborella trichopoda HOM05D001192 ORTHO05D002290 2.7e-07 60.5 337 25.8
SMO205G0014 Selaginella moellendorffii HOM05D001192 ORTHO05D002290 2.7e-07 60.5 302 24.8
ECA247G3492 Erigeron canadensis HOM05D001192 ORTHO05D010160 3.5e-07 60.1 320 24.4
HPP92_006659 Vanilla planifolia HOM05D001192 ORTHO05D002290 3.5e-07 60.1 310 25.2
HPP92_028711 Vanilla planifolia HOM05D001192 ORTHO05D002290 3.5e-07 60.1 287 26.5
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 4.6e-07 59.7 324 24.4
Zm00001eb150090 Zea mays HOM05D001192 ORTHO05D002290 6.0e-07 59.3 317 24.3
ATR0787G224 Amborella trichopoda HOM05D001192 ORTHO05D002290 1.0e-06 58.5 302 26.2
Nitab4.5_0009172g0030 Nicotiana tabacum HOM05D001192 ORTHO05D002290 1.3e-06 58.2 260 25.8
Rhsim11G0033900 Rhododendron simsii HOM05D021550 ORTHO05D023100 1.3e-06 58.2 315 27.0
PGSC0003DMG400046726 Solanum tuberosum HOM05D001192 ORTHO05D002290 1.3e-06 58.2 226 27.9
SGA_v2.0_scaffold1G00196 Striga asiatica HOM05D001192 ORTHO05D002290 1.3e-06 58.2 307 26.1
Rhsim13G0207100 Rhododendron simsii HOM05D021550 ORTHO05D023100 1.7e-06 57.8 310 27.1
CDE01G0442 Ceratophyllum demersum HOM05D001192 ORTHO05D002290 2.3e-06 57.4 351 23.9
SMO142G0063 Selaginella moellendorffii HOM05D001192 ORTHO05D002290 2.3e-06 57.4 304 24.0
HPP92_000653 Vanilla planifolia HOM05D001192 ORTHO05D002290 2.3e-06 57.4 336 25.0
SEGI_18297 Sequoiadendron giganteum HOM05D001192 ORTHO05D002290 3.0e-06 57.0 338 25.1
MSTRG.21355 Avicennia marina HOM05D001192 ORTHO05D002290 3.9e-06 56.6 292 22.9
MD15G1366300 Malus domestica HOM05D001192 ORTHO05D008198 3.9e-06 56.6 316 25.9
Os05g0490300 Oryza sativa ssp. japonica HOM05D001192 ORTHO05D002290 3.9e-06 56.6 338 24.0
Dinv07782 Davidia involucrata HOM05D001192 ORTHO05D017192 5.0e-06 56.2 205 30.2
Duzib168G0794 Durio zibethinus HOM05D001192 ORTHO05D002290 5.0e-06 56.2 202 25.7
MBI19_g28099_MAGBIO Magnolia biondii HOM05D001192 ORTHO05D002290 8.6e-06 55.5 334 24.9


User provided reference genes

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