Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 6.1e-258 893.6 457 100.0
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 1.4e-137 493.8 460 61.5
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 4.7e-109 399.1 546 50.2
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 8.6e-103 378.3 458 52.2
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 1.9e-102 377.1 463 51.8
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 2.7e-96 356.7 453 50.1
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 1.3e-95 354.4 457 47.7
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 3.3e-94 349.7 452 49.6
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 9.6e-94 348.2 460 48.0
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.6e-93 347.4 460 47.4
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 1.2e-91 341.3 464 48.1
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 1.3e-90 337.8 454 45.8
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 2.2e-90 337.0 462 46.5
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 3.8e-90 336.3 452 47.6
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 4.9e-90 335.9 457 47.3
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 6.4e-90 335.5 452 46.7
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 8.4e-90 335.1 465 46.5
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 1.1e-89 334.7 454 46.7
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 2.4e-89 333.6 452 45.4
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 3.2e-89 333.2 465 48.8
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 5.4e-89 332.4 458 47.8
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 1.2e-88 331.3 462 46.3
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 1.6e-88 330.9 466 46.6
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 7.8e-88 328.6 453 46.8
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 7.8e-88 328.6 458 47.8
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.1e-86 324.7 454 47.6
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 2.5e-86 323.6 448 47.8
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.3e-85 321.2 459 45.8
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 2.8e-85 320.1 456 45.4
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 2.8e-85 320.1 453 44.6
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 4.8e-85 319.3 464 44.8
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 6.2e-85 318.9 461 45.1
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 1.8e-84 317.4 457 45.7
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 2.4e-84 317.0 459 44.2
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 2.4e-84 317.0 473 45.2
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 3.1e-84 316.6 457 44.9
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 1.5e-83 314.3 462 45.2
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 2.0e-83 313.9 452 42.9
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.6e-83 313.5 468 44.0
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 2.6e-83 313.5 453 44.6
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 5.8e-83 312.4 461 44.0
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 1.3e-82 311.2 504 42.7
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 3.2e-81 306.6 460 44.6
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 7.1e-81 305.4 496 43.1
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 2.1e-80 303.9 473 45.0
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 1.0e-79 301.6 463 42.1
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 1.0e-79 301.6 463 43.4
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 1.3e-79 301.2 451 43.2
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 1.8e-79 300.8 459 43.8
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 2.3e-79 300.4 452 44.0
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 3.9e-79 299.7 454 42.1
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 3.3e-78 296.6 454 42.1
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 3.3e-78 296.6 452 44.7
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 4.3e-78 296.2 460 41.3
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 1.3e-77 294.7 454 42.5
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 2.1e-77 293.9 460 41.1
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 2.1e-77 293.9 464 41.4
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 2.8e-77 293.5 461 44.7
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 3.1e-76 290.0 460 40.9
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 4.0e-76 289.7 448 43.5
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 6.9e-76 288.9 469 40.7
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 6.9e-76 288.9 468 40.4
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 2.0e-75 287.3 465 40.9
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 2.0e-75 287.3 469 40.3
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 9.9e-75 285.0 462 43.3
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 9.9e-75 285.0 462 42.9
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 1.3e-74 284.6 491 40.3
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 3.8e-74 283.1 451 42.6
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 1.2e-72 278.1 479 40.7
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 1.3e-71 274.6 328 52.1
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.3e-69 268.1 362 46.4
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.8e-68 264.2 332 47.6
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 2.6e-67 260.4 321 47.0
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 2.7e-64 250.4 371 45.0
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.9e-62 244.2 317 46.7
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 2.5e-62 243.8 461 39.0
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 3.3e-62 243.4 460 39.1
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 1.5e-59 234.6 465 37.6
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 3.4e-59 233.4 152 73.7
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 4.5e-59 233.0 448 37.1
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 7.6e-59 232.3 453 38.9
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 1.0e-58 231.9 456 37.7
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.3e-58 231.5 318 47.5
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 1.0e-55 221.9 430 35.3
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 1.8e-55 221.1 310 43.2
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 3.0e-55 220.3 317 44.2
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 8.2e-53 212.2 427 38.2
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 1.2e-51 208.4 320 40.9
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 2.2e-50 204.1 404 38.9
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 2.2e-50 204.1 360 38.9
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 1.4e-49 201.4 332 38.3
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 1.5e-46 191.4 333 38.4
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 1.7e-45 188.0 476 33.2
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 3.7e-45 186.8 334 37.4
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 2.4e-44 184.1 330 37.9
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 5.9e-43 179.5 361 36.3
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 1.7e-42 177.9 329 40.7
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 1.4e-41 174.9 373 36.5
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 2.5e-41 174.1 483 32.7
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 8.8e-39 165.6 408 33.1
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 5.7e-38 162.9 317 36.9
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 3.1e-36 157.1 148 51.4
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 2.5e-33 147.5 225 45.3
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 1.0e-31 142.1 152 50.7
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 1.5e-30 138.3 153 52.3
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 1.5e-30 138.3 153 52.3
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 2.2e-29 134.4 470 30.0
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 1.8e-28 131.3 408 29.2
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 3.1e-28 130.6 473 26.8
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 3.8e-26 123.6 244 37.3
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 6.5e-26 122.9 377 31.0
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 5.5e-25 119.8 92 65.2
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 1.6e-24 118.2 119 56.3
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 7.0e-20 102.8 97 52.6
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.2e-19 102.1 63 76.2
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 4.5e-19 100.1 93 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.3e-18 98.6 147 42.2
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 1.3e-18 98.6 66 77.3
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 1.1e-17 95.5 94 55.3
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.3e-13 82.0 150 34.7
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 7.0e-12 76.3 91 49.5
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 1.0e-10 72.4 72 56.9
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 1.2e-08 65.5 47 61.7
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 1.2e-08 65.5 47 61.7
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 8.9e-07 59.3 39 71.8


User provided reference genes

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