Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.4e-46 186.8 92 100.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.4e-20 100.9 50 100.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.5e-19 98.2 50 96.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.9e-18 95.1 50 94.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.6e-16 89.4 44 97.7
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.9e-13 77.8 50 74.0
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 6.3e-13 77.4 50 76.0
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.1e-12 76.6 50 76.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-12 76.6 50 76.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-12 76.6 50 76.0
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-12 76.6 50 76.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-12 76.6 50 76.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-12 76.6 50 76.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.1e-12 76.6 52 75.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.4e-12 76.3 50 74.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.4e-12 75.5 50 74.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.1e-12 75.1 51 72.5
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 4.1e-12 74.7 50 74.0
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.1e-12 74.7 50 74.0
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 7.0e-12 73.9 49 69.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 7.0e-12 73.9 50 74.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 9.2e-12 73.6 50 70.0
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.2e-11 73.2 48 72.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.6e-11 72.8 50 68.0
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.6e-11 72.8 50 72.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.0e-11 72.4 50 72.0
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.7e-11 72.0 50 66.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-11 71.6 50 70.0
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.5e-11 71.6 50 68.0
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.5e-11 71.6 50 68.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 3.5e-11 71.6 50 70.0
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.5e-11 71.2 51 70.6
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 5.9e-11 70.9 49 73.5
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 5.9e-11 70.9 50 70.0
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.8e-11 70.5 51 66.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.8e-11 70.5 51 66.7
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 7.8e-11 70.5 50 68.0
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.8e-11 70.5 50 68.0
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.0e-10 70.1 50 70.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-10 69.7 50 68.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.3e-10 69.7 50 64.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.7e-10 69.3 50 66.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.7e-10 69.3 51 66.7
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.7e-10 69.3 50 68.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.3e-10 68.9 48 64.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 2.3e-10 68.9 50 70.0
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.3e-10 68.9 50 64.0
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 2.9e-10 68.6 50 62.0
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.8e-10 68.2 50 62.0
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.8e-10 68.2 49 67.3
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.8e-10 68.2 50 68.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.8e-10 68.2 50 68.0
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.8e-10 68.2 48 64.6
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 5.0e-10 67.8 50 60.0
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.0e-10 67.8 50 62.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 6.6e-10 67.4 48 62.5
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 8.6e-10 67.0 48 62.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 8.6e-10 67.0 50 68.0
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.1e-09 66.6 50 70.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.1e-09 66.6 49 71.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.1e-09 66.6 50 66.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.5e-09 66.2 48 60.4
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.5e-09 66.2 50 64.0
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.5e-09 66.2 48 62.5
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.9e-09 65.9 48 60.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.9e-09 65.9 48 60.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.9e-09 65.9 48 60.4
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.9e-09 65.9 48 60.4
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.9e-09 65.9 48 60.4
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.5e-09 65.5 48 60.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.3e-09 65.1 49 65.3
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.3e-09 65.1 49 65.3
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.6e-09 64.3 48 58.3
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.6e-09 64.3 48 58.3
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.6e-09 64.3 48 58.3
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.6e-09 64.3 48 58.3
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.6e-09 64.3 48 58.3
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 5.6e-09 64.3 48 58.3
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 5.6e-09 64.3 50 58.0
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 5.6e-09 64.3 47 61.7
Rhsim04G0170200 Rhododendron simsii HOM05D000866 ORTHO05D000673 5.6e-09 64.3 36 83.3
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 7.3e-09 63.9 47 61.7
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 9.5e-09 63.5 46 67.4
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 9.5e-09 63.5 48 68.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 9.5e-09 63.5 47 59.6
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 9.5e-09 63.5 50 60.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 9.5e-09 63.5 50 64.0
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 9.5e-09 63.5 49 67.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 9.5e-09 63.5 47 61.7
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.2e-08 63.2 43 65.1
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.2e-08 63.2 43 65.1
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-08 63.2 47 59.6
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.2e-08 63.2 47 61.7
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.6e-08 62.8 46 65.2
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.6e-08 62.8 49 63.3
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.6e-08 62.8 47 61.7
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.6e-08 62.8 46 65.2
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.1e-08 62.4 47 59.6
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 2.8e-08 62.0 48 56.2
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 2.8e-08 62.0 48 62.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 2.8e-08 62.0 49 59.2
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 3.6e-08 61.6 50 66.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.7e-08 61.2 50 66.0
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.7e-08 61.2 50 66.0
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 4.7e-08 61.2 37 75.7
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 6.1e-08 60.8 48 58.3
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 6.1e-08 60.8 50 64.0
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 8.0e-08 60.5 50 62.0
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.0e-07 60.1 46 60.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.8e-07 59.3 50 58.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.8e-07 59.3 50 60.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.0e-07 58.5 48 60.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 4.0e-07 58.2 48 56.2
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 4.0e-07 58.2 46 65.2
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 5.2e-07 57.8 48 58.3
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 5.2e-07 57.8 49 53.1
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 6.8e-07 57.4 47 57.4
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 8.9e-07 57.0 46 65.2
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-06 56.6 34 73.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-06 56.6 34 73.5
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.2e-06 56.6 35 80.0
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.5e-06 56.2 50 60.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.6e-06 55.5 42 59.5
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 5.7e-06 54.3 48 52.1


User provided reference genes

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