Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.1e-75 284.6 144 100.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.7e-25 117.5 118 60.2
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.6e-17 91.3 109 52.3
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.3e-16 89.0 44 97.7
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.4e-14 83.6 44 93.2
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.7e-12 76.6 66 62.1
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.9e-12 75.9 78 53.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.8e-12 75.5 89 49.4
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 6.4e-12 74.7 78 53.8
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.4e-12 74.7 78 53.8
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.4e-12 74.7 78 53.8
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 6.4e-12 74.7 78 52.6
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.4e-12 74.3 68 57.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-11 73.6 78 52.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.4e-11 73.6 69 59.4
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.9e-11 73.2 65 58.5
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.4e-11 72.8 68 55.9
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 2.4e-11 72.8 78 52.6
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 4.2e-11 72.0 68 54.4
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 5.4e-11 71.6 68 54.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 7.1e-11 71.2 68 54.4
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 9.3e-11 70.9 67 53.7
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 9.3e-11 70.9 69 58.0
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.6e-10 70.1 67 58.2
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-10 68.9 67 58.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 3.5e-10 68.9 78 48.7
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.5e-10 68.9 66 54.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.5e-10 68.9 66 54.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.6e-10 68.6 67 50.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.6e-10 68.6 67 50.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 4.6e-10 68.6 69 52.2
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.6e-10 68.6 68 51.5
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.6e-10 68.6 68 51.5
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 6.0e-10 68.2 68 51.5
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.9e-10 67.8 38 84.2
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 7.9e-10 67.8 64 54.7
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 7.9e-10 67.8 68 51.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.0e-09 67.4 68 51.5
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.0e-09 67.4 67 53.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.3e-09 67.0 69 52.2
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.3e-09 67.0 65 58.5
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-09 66.6 68 50.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.8e-09 66.6 67 56.7
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.8e-09 66.6 37 83.8
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.3e-09 66.2 69 50.7
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 3.0e-09 65.9 68 48.5
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.0e-09 65.9 80 48.8
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.9e-09 65.5 40 77.5
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.9e-09 65.5 67 50.7
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.9e-09 65.5 67 50.7
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.9e-09 65.5 65 53.8
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 5.1e-09 65.1 67 49.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 6.7e-09 64.7 66 50.0
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 6.7e-09 64.7 66 50.0
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 6.7e-09 64.7 65 52.3
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.7e-09 64.7 68 50.0
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 8.7e-09 64.3 68 45.6
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 8.7e-09 64.3 65 53.8
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.1e-08 63.9 78 44.9
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.1e-08 63.9 66 53.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.1e-08 63.9 67 56.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.1e-08 63.9 37 83.8
Rhsim04G0170200 Rhododendron simsii HOM05D000866 ORTHO05D000673 1.1e-08 63.9 36 83.3
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.9e-08 63.2 65 52.3
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.5e-08 62.8 68 50.0
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.3e-08 62.4 65 47.7
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 3.3e-08 62.4 65 47.7
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 3.3e-08 62.4 62 53.2
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 5.6e-08 61.6 39 76.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 5.6e-08 61.6 65 50.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.6e-08 61.6 65 47.7
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 7.4e-08 61.2 37 75.7
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 9.6e-08 60.8 36 75.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 9.6e-08 60.8 66 54.5
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 9.6e-08 60.8 44 63.6
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.3e-07 60.5 67 46.3
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.3e-07 60.5 65 53.8
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.3e-07 60.5 65 53.8
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.3e-07 60.5 66 53.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.6e-07 60.1 44 61.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.6e-07 60.1 65 52.3
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.6e-07 60.1 36 75.0
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.1e-07 59.7 63 49.2
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.1e-07 59.7 36 75.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.1e-07 59.7 63 50.8
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.1e-07 59.7 35 77.1
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 2.8e-07 59.3 64 50.0
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.8e-07 59.3 44 61.4
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.8e-07 59.3 44 61.4
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.8e-07 59.3 65 46.2
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.7e-07 58.9 87 39.1
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.7e-07 58.9 63 49.2
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 4.8e-07 58.5 78 42.3
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 4.8e-07 58.5 64 48.4
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 4.8e-07 58.5 59 52.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 4.8e-07 58.5 64 48.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.2e-07 58.2 81 39.5
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 6.2e-07 58.2 36 69.4
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 8.1e-07 57.8 65 49.2
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 8.1e-07 57.8 42 61.9
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 37 67.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 42 61.9
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 42 61.9
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 8.1e-07 57.8 42 61.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 8.1e-07 57.8 37 67.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 8.1e-07 57.8 44 59.1
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 8.1e-07 57.8 39 66.7
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 8.1e-07 57.8 36 69.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 8.1e-07 57.8 65 47.7
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.4e-06 57.0 37 70.3
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.4e-06 57.0 42 59.5
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-06 56.6 42 59.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.8e-06 56.6 35 68.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.8e-06 56.6 34 73.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.8e-06 56.6 34 73.5
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-06 56.2 35 71.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 3.1e-06 55.8 44 56.8
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 3.1e-06 55.8 64 45.3
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 4.0e-06 55.5 35 68.6
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 4.0e-06 55.5 42 59.5
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 4.0e-06 55.5 43 55.8
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 5.3e-06 55.1 33 78.8


User provided reference genes

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