Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.2e-160 570.5 474 100.0
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 4.6e-75 286.2 419 66.8
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.8e-72 276.9 387 66.4
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 9.0e-71 271.9 452 64.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.5e-70 271.2 391 66.5
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 1.3e-69 268.1 389 67.4
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.2e-67 261.5 450 60.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.6e-67 260.0 413 62.7
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 7.9e-67 258.8 389 66.1
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 3.9e-66 256.5 388 66.2
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.7e-66 255.8 476 61.6
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 8.8e-66 255.4 396 64.9
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.5e-65 253.8 478 63.0
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 3.3e-65 253.4 391 65.7
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 4.3e-65 253.1 476 60.3
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 7.4e-65 252.3 404 67.3
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 7.4e-65 252.3 404 67.3
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.7e-65 251.9 390 64.6
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 9.7e-65 251.9 391 64.5
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.7e-64 251.1 467 62.1
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.7e-64 251.1 394 63.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 2.2e-64 250.8 389 65.3
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.7e-64 250.0 389 64.8
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.1e-63 248.4 392 63.8
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.4e-63 248.1 391 63.2
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.4e-63 247.3 388 66.5
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 4.1e-63 246.5 389 63.2
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.9e-63 245.7 392 63.5
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 9.1e-63 245.4 389 62.5
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.0e-62 244.2 387 66.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.0e-62 244.2 387 66.7
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 2.6e-62 243.8 391 63.9
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.4e-62 243.4 390 63.6
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 4.5e-62 243.0 389 63.8
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 5.9e-62 242.7 410 61.0
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 5.9e-62 242.7 391 63.2
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 7.7e-62 242.3 387 64.6
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 1.0e-61 241.9 388 63.1
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 2.9e-61 240.4 391 63.7
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 3.8e-61 240.0 393 62.6
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 5.0e-61 239.6 388 63.7
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.1e-60 238.4 390 64.9
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.4e-60 238.0 325 69.5
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.4e-60 238.0 391 62.7
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.2e-60 236.9 390 64.9
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 5.5e-60 236.1 389 62.2
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 1.6e-59 234.6 482 58.7
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.1e-59 234.2 405 60.2
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.1e-59 234.2 440 59.3
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.7e-59 233.8 390 62.1
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.7e-59 233.8 390 62.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 3.6e-59 233.4 476 58.2
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 4.7e-59 233.0 418 62.9
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 4.7e-59 233.0 389 61.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.7e-59 233.0 390 62.1
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.0e-58 231.9 389 61.4
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-58 231.5 407 59.7
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.3e-58 230.7 396 61.6
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.0e-58 230.3 483 56.3
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 5.1e-58 229.6 394 60.4
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 5.1e-58 229.6 391 62.4
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 5.1e-58 229.6 472 59.3
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 8.8e-58 228.8 324 69.1
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 8.8e-58 228.8 407 59.7
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 8.8e-58 228.8 407 60.7
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.6e-57 227.3 391 60.1
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.3e-57 226.9 392 62.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 9.7e-57 225.3 385 63.9
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.2e-56 224.2 387 63.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 6.3e-56 222.6 458 57.6
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 6.3e-56 222.6 407 60.0
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 6.3e-56 222.6 391 60.6
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.2e-56 222.2 392 59.9
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.1e-55 221.9 476 55.9
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.4e-55 220.7 374 62.8
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.1e-55 220.3 400 62.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.1e-55 219.9 469 55.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 4.1e-55 219.9 359 64.9
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 5.3e-55 219.5 390 63.6
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.3e-55 219.5 396 61.1
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.0e-55 219.2 400 62.0
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 7.0e-55 219.2 396 62.1
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 4.5e-54 216.5 390 60.3
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.0e-53 215.3 392 60.2
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.0e-53 215.3 392 59.4
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.9e-52 211.1 392 61.5
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 2.5e-52 210.7 393 61.3
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.5e-52 210.7 388 61.9
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 3.2e-52 210.3 399 58.6
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 7.2e-52 209.1 393 62.1
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.7e-51 207.2 399 59.6
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.7e-51 207.2 399 59.6
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.7e-51 207.2 384 62.0
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.6e-51 206.8 388 60.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 3.6e-51 206.8 389 60.2
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 6.1e-51 206.1 399 59.6
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 6.1e-51 206.1 399 59.6
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 6.1e-51 206.1 399 59.6
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.1e-51 206.1 403 58.3
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.4e-50 204.9 427 62.8
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.4e-50 204.9 397 60.7
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.8e-50 204.5 394 59.9
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.8e-50 204.5 380 62.1
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 3.0e-50 203.8 334 64.4
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 5.2e-50 203.0 377 57.8
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.2e-50 203.0 372 63.4
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.1e-49 201.8 376 57.7
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.5e-49 201.4 389 60.2
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-49 201.1 388 60.1
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.6e-49 200.7 389 60.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.3e-49 200.3 477 54.9
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.3e-48 196.1 362 60.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 8.2e-48 195.7 385 61.6
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.1e-47 193.7 418 59.3
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.2e-46 191.8 393 60.1
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.5e-46 190.3 395 61.0
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 7.7e-46 189.1 398 58.8
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 7.7e-46 189.1 398 58.8
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 5.0e-45 186.4 392 56.1
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.1e-44 185.3 386 57.8
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.1e-43 181.0 335 61.8
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.6e-43 180.3 390 58.7
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 4.7e-43 179.9 406 57.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.0e-42 177.2 399 57.4
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 4.8e-40 169.9 401 52.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.6e-38 164.9 173 55.5
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 4.5e-38 163.3 349 55.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.3e-37 161.8 393 56.5
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 8.5e-37 159.1 305 64.3
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.9e-36 157.9 121 71.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 5.5e-36 156.4 392 56.6
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 6.1e-35 152.9 392 38.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.0e-34 150.6 391 55.0
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.0e-34 150.6 391 55.0
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 6.8e-34 149.4 385 56.6
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 8.8e-34 149.1 391 55.0
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 8.8e-34 149.1 400 53.2
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.5e-33 148.3 379 36.1
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.1e-31 140.6 102 72.5
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.0e-30 137.9 405 52.1
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.0e-29 135.6 196 48.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.0e-29 135.6 179 48.6
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.7e-29 134.8 348 47.1
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.5e-28 131.7 124 60.5
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 4.2e-28 130.2 405 52.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 9.5e-28 129.0 281 65.5
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.6e-27 127.1 380 53.2
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 4.7e-27 126.7 335 57.0
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.6e-25 120.9 397 43.6
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 3.4e-25 120.6 169 46.2
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.7e-24 118.2 120 58.3
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 2.8e-24 117.5 289 60.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 3.7e-24 117.1 412 50.2
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.5e-22 110.5 106 58.5
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 3.5e-22 110.5 117 52.1
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.7e-21 108.2 337 51.9
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.5e-17 95.1 407 47.4
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.0e-17 94.7 169 39.1
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.4e-17 93.6 400 43.2
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 5.8e-17 93.2 104 53.8
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 8.3e-16 89.4 119 42.9
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 5.0e-13 80.1 160 43.8
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.4e-10 72.0 114 44.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 8.9e-10 69.3 112 42.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 5.8e-09 66.6 193 31.6
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 8.3e-08 62.8 160 31.2


User provided reference genes

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