Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.5e-49 198.0 99 100.0
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.2e-30 136.3 97 73.2
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.6e-17 91.3 97 52.6
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.0e-16 90.1 89 55.1
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-15 86.7 97 48.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 4.3e-15 84.7 94 54.3
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 5.6e-15 84.3 100 57.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 7.3e-15 84.0 98 54.1
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 7.3e-15 84.0 97 50.5
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.2e-14 83.2 97 49.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.8e-14 82.0 91 50.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.8e-14 82.0 97 52.6
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.6e-14 81.6 97 53.6
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 8.1e-14 80.5 97 50.5
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.1e-13 80.1 97 49.5
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.4e-13 79.7 97 49.5
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.8e-13 79.3 91 51.6
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.3e-13 79.0 97 53.6
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.0e-13 78.2 97 49.5
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 8.9e-13 77.0 97 49.5
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.5e-12 76.3 101 44.6
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.5e-12 76.3 102 49.0
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.0e-12 75.9 98 51.0
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.6e-12 75.5 92 53.3
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.6e-12 75.5 100 48.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 2.6e-12 75.5 97 50.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 3.4e-12 75.1 98 49.0
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 4.4e-12 74.7 100 51.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 4.4e-12 74.7 99 47.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 5.8e-12 74.3 97 47.4
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 5.8e-12 74.3 97 51.5
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 7.5e-12 73.9 100 42.0
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 9.9e-12 73.6 99 49.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 9.9e-12 73.6 99 49.5
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 9.9e-12 73.6 86 54.7
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.7e-11 72.8 108 48.1
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.2e-11 72.4 99 49.5
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.2e-11 72.4 90 52.2
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.2e-11 72.4 98 49.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 6.4e-11 70.9 101 47.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 8.3e-11 70.5 97 46.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.1e-10 70.1 102 43.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 1.4e-10 69.7 63 65.1
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.4e-10 69.7 98 44.9
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.4e-10 69.7 106 45.3
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-10 69.7 86 51.2
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.9e-10 69.3 99 42.4
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.4e-10 68.9 94 44.7
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 3.2e-10 68.6 85 51.8
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 5.4e-10 67.8 99 48.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.1e-10 67.4 103 48.5
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.1e-10 67.4 86 47.7
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 9.2e-10 67.0 98 46.9
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.6e-09 66.2 100 44.0
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.1e-09 65.9 98 41.8
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.1e-09 65.9 100 44.0
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.1e-09 65.9 100 44.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.7e-09 65.5 97 39.2
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.7e-09 65.5 100 44.0
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.7e-09 65.5 97 40.2
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 3.5e-09 65.1 97 44.3
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 3.5e-09 65.1 97 44.3
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 6.0e-09 64.3 101 39.6
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.0e-09 64.3 73 53.4
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 7.8e-09 63.9 92 46.7
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 7.8e-09 63.9 98 46.9
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.8e-09 63.9 100 43.0
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 7.8e-09 63.9 97 39.2
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.0e-08 63.5 90 42.2
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-08 63.5 98 40.8
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.3e-08 63.2 101 46.5
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.3e-08 63.2 92 45.7
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.3e-08 62.4 75 53.3
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.9e-08 61.6 101 44.6
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 5.1e-08 61.2 78 47.4
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 8.6e-08 60.5 101 39.6
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 99 42.4
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.5e-07 59.7 101 44.6
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.5e-07 59.7 101 44.6
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.5e-07 59.7 60 56.7
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.9e-07 59.3 94 42.6
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.9e-07 59.3 94 41.5
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 5.6e-07 57.8 83 44.6
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 5.6e-07 57.8 96 43.8
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.3e-07 57.4 60 56.7
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 9.5e-07 57.0 99 39.4
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.6e-06 56.2 97 41.2
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 2.1e-06 55.8 97 38.1
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.8e-06 55.5 96 40.6
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.8e-06 55.5 93 40.9
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.6e-06 55.1 97 36.1
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.7e-06 54.7 107 34.6
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 4.7e-06 54.7 97 36.1
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 6.2e-06 54.3 98 41.8
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 8.1e-06 53.9 98 39.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 8.1e-06 53.9 98 39.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 8.1e-06 53.9 98 39.8


User provided reference genes

Program Settings