Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 4.3e-120 434.9 255 100.0
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.2e-66 257.3 255 61.6
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.2e-66 257.3 263 60.5
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.6e-66 256.9 255 61.6
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 4.0e-65 252.3 255 62.0
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 8.9e-65 251.1 255 61.2
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 4.9e-63 245.4 254 57.5
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 1.2e-61 240.7 255 59.2
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 2.5e-59 233.0 254 57.5
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 8.1e-58 228.0 255 59.2
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 8.1e-58 228.0 253 56.5
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 3.1e-57 226.1 255 55.7
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 3.1e-57 226.1 255 56.1
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 2.0e-56 223.4 258 54.7
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 5.8e-56 221.9 255 54.5
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.2e-55 219.9 255 54.1
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 4.9e-55 218.8 259 54.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.9e-55 218.8 255 54.9
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 8.3e-55 218.0 253 55.3
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 8.3e-55 218.0 256 53.5
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 8.3e-55 218.0 259 54.4
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.4e-54 216.5 255 54.5
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 3.2e-54 216.1 257 54.9
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 5.4e-54 215.3 255 53.7
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 5.4e-54 215.3 255 54.5
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 9.2e-54 214.5 257 54.9
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.7e-53 213.0 267 52.4
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 2.7e-53 213.0 256 53.5
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 3.5e-53 212.6 256 53.9
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 6.0e-53 211.8 289 49.1
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 1.0e-52 211.1 251 52.6
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 1.3e-52 210.7 260 52.3
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 2.3e-52 209.9 255 52.2
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 2.3e-52 209.9 258 52.3
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 5.1e-52 208.8 251 54.2
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 6.6e-52 208.4 255 52.5
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 2.5e-51 206.5 255 52.9
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 9.5e-51 204.5 254 50.8
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.6e-50 203.8 255 50.6
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 2.8e-50 203.0 255 51.4
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 3.6e-50 202.6 253 51.8
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 8.1e-50 201.4 251 50.6
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 4.0e-49 199.1 252 50.4
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 6.8e-49 198.4 251 52.2
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 2.6e-48 196.4 220 54.5
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 3.4e-48 196.1 255 51.0
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 4.4e-48 195.7 256 54.7
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 9.9e-48 194.5 255 51.8
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 1.3e-47 194.1 256 48.8
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 2.2e-47 193.4 256 49.2
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 2.2e-47 193.4 255 52.2
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 1.1e-46 191.0 212 53.8
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.1e-46 191.0 250 49.6
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 1.9e-46 190.3 252 49.2
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 2.4e-46 189.9 256 48.8
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.4e-46 188.7 256 50.0
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 7.1e-46 188.3 255 49.8
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 9.2e-46 188.0 256 49.6
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 9.2e-46 188.0 212 53.8
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 2.7e-45 186.4 269 47.2
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 3.5e-45 186.0 256 46.9
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 3.5e-45 186.0 228 50.4
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 6.0e-45 185.3 247 46.6
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.0e-44 184.5 259 49.4
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.0e-44 184.5 256 48.4
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.3e-44 184.1 260 49.2
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 1.5e-43 180.6 237 48.1
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.5e-43 179.9 217 51.6
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.5e-43 179.9 279 45.2
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.3e-43 179.5 256 45.3
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 7.3e-43 178.3 256 47.7
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 3.6e-42 176.0 245 46.5
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 2.6e-40 169.9 198 55.1
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 7.1e-38 161.8 255 46.3
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 3.5e-37 159.5 262 48.1
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 4.6e-37 159.1 256 43.8
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 6.0e-37 158.7 260 44.6
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 5.1e-36 155.6 256 43.4
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.5e-35 153.3 213 47.4
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 4.3e-35 152.5 164 57.3
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 7.3e-35 151.8 259 46.7
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 8.1e-34 148.3 255 43.1
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 2.0e-32 143.7 247 43.3
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 2.0e-32 143.7 217 40.6
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 3.4e-32 142.9 162 54.9
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 4.4e-32 142.5 256 39.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-31 141.0 194 47.4
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 1.7e-31 140.6 195 48.2
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.7e-31 140.6 195 46.7
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.9e-31 139.8 159 53.5
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 6.4e-31 138.7 159 53.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.4e-30 136.7 255 39.2
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 2.4e-30 136.7 255 42.0
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 3.2e-30 136.3 204 45.1
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 3.5e-29 132.9 249 38.6
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 1.0e-28 131.3 199 45.7
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.3e-27 126.3 199 43.2
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.6e-26 122.9 261 40.2
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 3.1e-25 119.8 250 31.6
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 1.2e-24 117.9 218 39.4
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.0e-24 117.1 230 47.4
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 4.5e-24 115.9 258 38.4
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 2.2e-23 113.6 256 42.2
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 4.2e-22 109.4 133 51.9
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 5.4e-22 109.0 199 41.2
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 9.3e-22 108.2 255 37.3
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 6.0e-21 105.5 242 30.6
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 2.2e-15 87.0 68 72.1
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.0e-12 78.2 212 33.5
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 1.3e-12 77.8 138 39.9
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 3.0e-12 76.6 72 63.9
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 3.9e-12 76.3 123 39.8
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.9e-11 73.9 72 61.1
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 9.6e-11 71.6 72 59.7
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 3.7e-10 69.7 244 30.3
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 1.1e-09 68.2 161 30.4
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 1.8e-09 67.4 104 43.3
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 2.4e-09 67.0 42 85.7
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 6.9e-09 65.5 55 63.6
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.5e-08 64.3 216 39.4
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.3e-07 61.2 216 38.4
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 8.4e-07 58.5 215 27.4
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 9.3e-06 55.1 183 33.9


User provided reference genes

Program Settings