Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 2469.9 1423 100.0
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1966.0 1404 75.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1660.6 1552 64.3
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1553.5 1569 57.7
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1429.8 1420 60.4
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1418.7 1423 57.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1396.3 1396 60.3
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1333.9 1520 52.0
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1332.8 1446 57.8
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1318.5 1446 55.5
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1315.4 1407 54.9
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1294.3 1413 57.7
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1283.1 1492 50.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1268.4 1401 54.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1267.3 1445 52.5
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1261.5 1407 54.8
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1261.1 1433 53.9
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1256.1 1407 54.4
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1254.6 1404 53.4
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1252.7 1529 50.9
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1247.6 1486 52.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1241.5 1513 51.0
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1232.2 1454 51.9
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1229.9 1505 56.0
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1222.6 1532 52.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1216.4 1542 47.9
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1212.6 1395 53.2
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1212.2 1525 50.0
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1208.4 1523 50.6
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1186.4 1447 50.7
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1178.3 1447 49.7
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1177.2 1552 47.0
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1172.9 1302 55.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1172.1 1514 50.5
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1166.4 1538 45.3
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1165.6 1447 49.4
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1165.2 1404 53.1
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1163.3 1469 50.3
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1162.5 1411 50.0
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1162.1 1479 48.4
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1161.4 1433 53.9
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1155.2 1458 54.4
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1153.3 1405 48.3
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1148.3 1404 48.2
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1144.0 1411 49.6
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1143.3 1408 49.7
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1137.1 1471 51.9
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1136.7 1421 49.5
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1136.7 1416 53.7
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1134.8 1421 53.3
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1133.6 1405 50.6
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1132.1 1429 50.9
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1132.1 1486 49.1
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1125.2 1409 48.0
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1124.0 1408 47.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1122.1 1572 44.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1483 46.9
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1119.8 1411 48.1
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1115.1 1421 49.8
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1114.8 1398 54.0
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1108.6 1520 45.8
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1106.3 1405 50.2
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1101.3 1447 48.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1096.3 1437 48.8
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 0.0e+00 1094.7 1414 53.6
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1090.5 1522 47.6
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1090.1 1467 46.6
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1084.7 1406 48.4
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1076.6 1406 50.4
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.7e-306 1056.6 899 62.3
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 2.5e-305 1052.7 1422 49.4
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 6.0e-304 1048.1 1480 50.3
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 7.9e-304 1047.7 1358 54.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 3.3e-302 1042.3 1404 46.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.8e-301 1038.5 1794 39.0
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.0e-299 1033.1 1402 51.9
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.4e-297 1026.9 1385 47.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 3.2e-297 1025.8 1429 46.5
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.5e-296 1022.3 1339 50.1
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.7e-294 1014.2 1467 50.0
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.4e-289 1000.3 1401 46.6
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.7e-288 996.1 943 56.6
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.6e-288 995.3 1401 46.3
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 3.7e-285 985.7 1486 44.7
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 4.2e-281 972.2 1393 43.8
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 5.5e-281 971.8 1436 46.3
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.2e-273 946.0 952 55.5
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 7.0e-268 928.3 1260 48.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.1e-260 902.9 735 66.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 3.5e-259 899.4 1438 44.1
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 7.5e-230 802.0 1408 41.7
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.9e-228 797.3 2334 30.3
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 5.4e-220 769.2 768 55.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.9e-213 746.9 1205 40.1
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 6.6e-210 735.7 1423 35.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 9.7e-177 625.5 1369 35.2
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.2e-176 624.4 1464 33.9
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 7.9e-171 605.9 516 62.0
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.2e-164 582.8 680 47.9
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.1e-159 568.9 863 42.8
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.5e-148 531.2 873 38.9
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.4e-138 498.8 546 54.2
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.0e-137 495.0 1180 37.6
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.0e-130 471.1 1328 32.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 6.6e-125 453.4 422 60.2
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.9e-109 401.0 366 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.1e-106 392.9 1567 27.4
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.9e-104 384.0 465 46.2
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.0e-101 376.3 1525 31.6
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.0e-97 362.1 351 57.3
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 3.9e-93 347.8 937 30.4
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.6e-93 347.1 363 54.5
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 9.0e-90 336.7 360 54.4
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 4.5e-89 334.3 1447 29.9
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.9e-84 318.9 366 50.8
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.8e-83 315.1 300 53.0
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 8.4e-80 303.5 292 59.9
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.0e-73 282.3 433 50.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.2e-55 221.9 147 77.6
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.7e-48 199.5 511 36.2
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.4e-47 193.7 308 39.6
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.7e-46 191.4 842 25.8
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.6e-44 185.7 147 68.7
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 4.4e-44 184.9 129 75.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.8e-37 162.9 234 40.6
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 1.8e-34 152.9 146 58.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.2e-33 150.2 403 38.0
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-33 147.9 662 23.9
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.3e-29 136.0 318 31.1
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 7.0e-26 124.4 92 69.6
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.0e-24 118.2 93 64.5
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.9e-23 116.3 720 23.1
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 7.2e-23 114.4 348 27.0
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.8e-21 109.8 97 58.8
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 4.0e-21 108.6 74 70.3
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 3.4e-20 105.5 175 38.9
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.4e-13 83.6 253 27.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.9e-11 75.9 132 43.2
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 5.4e-10 71.6 103 39.8
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.3e-08 66.2 83 51.8
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 4.7e-06 58.5 207 28.0


User provided reference genes

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