Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0155500 Rhododendron simsii HOM05D006945 ORTHO05D005549 6.9e-74 280.4 128 100.0
Rhsim13G0155400 Rhododendron simsii HOM05D006945 ORTHO05D005549 4.1e-42 174.9 127 64.6
BcaNung02932 Brassica carinata HOM05D006945 ORTHO05D005549 5.5e-23 111.3 137 40.1
BolC7t46664H Brassica oleracea HOM05D006945 ORTHO05D005549 9.4e-23 110.5 140 39.3
BcaNung02066 Brassica carinata HOM05D006945 ORTHO05D005549 8.0e-22 107.5 140 39.3
BcaNung02068 Brassica carinata HOM05D006945 ORTHO05D005549 8.0e-22 107.5 140 39.3
C07p62500 Brassica napus HOM05D006945 ORTHO05D005549 1.0e-21 107.1 139 38.8
AL7G52460 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 1.4e-21 106.7 114 44.7
Carub.0004s0716 Capsella rubella HOM05D006945 ORTHO05D005549 4.0e-21 105.1 131 40.5
AL7G22140 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 1.1e-20 103.6 129 39.5
BolC7t46212H Brassica oleracea HOM05D006945 ORTHO05D005549 1.5e-20 103.2 137 39.4
BolC6t36787H Brassica oleracea HOM05D006945 ORTHO05D005549 2.6e-20 102.4 135 40.7
AT4G30074 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 3.3e-20 102.1 136 41.2
BcaC08g44188 Brassica carinata HOM05D006945 ORTHO05D005549 4.4e-20 101.7 137 40.1
Thhalv10026566m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 4.4e-20 101.7 129 38.0
Sp7g27870 Schrenkiella parvula HOM05D006945 ORTHO05D005549 4.4e-20 101.7 133 39.1
C07p57440 Brassica napus HOM05D006945 ORTHO05D005549 1.3e-19 100.1 137 38.7
AT4G30070 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 1.7e-19 99.8 131 36.6
A03p59420 Brassica napus HOM05D006945 ORTHO05D005549 1.7e-19 99.8 135 39.3
PGR044G0988 Punica granatum HOM05D006945 ORTHO05D005549 1.7e-19 99.8 127 40.9
CARHR237970 Cardamine hirsuta HOM05D006945 ORTHO05D005549 2.8e-19 99.0 136 34.6
BraA03t14998Z Brassica rapa HOM05D006945 ORTHO05D005549 4.8e-19 98.2 135 39.3
C06p15950 Brassica napus HOM05D006945 ORTHO05D005549 6.3e-19 97.8 104 44.2
A03p59240 Brassica napus HOM05D006945 ORTHO05D005549 8.2e-19 97.4 129 40.3
Carub.0007s1058 Capsella rubella HOM05D006945 ORTHO05D005549 8.2e-19 97.4 133 36.8
AL7G22130 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 1.4e-18 96.7 110 41.8
Sp7g27890 Schrenkiella parvula HOM05D006945 ORTHO05D005549 1.8e-18 96.3 136 36.8
Eucgr.C02226 Eucalyptus grandis HOM05D006945 ORTHO05D005549 2.4e-18 95.9 106 47.2
Carub.0005s0829 Capsella rubella HOM05D006945 ORTHO05D005549 4.1e-18 95.1 135 36.3
Carub.0007s1055 Capsella rubella HOM05D006945 ORTHO05D005549 7.0e-18 94.4 128 36.7
Eucgr.C02232 Eucalyptus grandis HOM05D006945 ORTHO05D005549 9.1e-18 94.0 106 46.2
AT5G38330 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 2.0e-17 92.8 125 37.6
A08p19430 Brassica napus HOM05D006945 ORTHO05D005549 3.5e-17 92.0 130 38.5
BraA08t33905Z Brassica rapa HOM05D006945 ORTHO05D005549 3.5e-17 92.0 130 38.5
BcaNung00513 Brassica carinata HOM05D006945 ORTHO05D005549 1.3e-16 90.1 104 40.4
BcaNung00514 Brassica carinata HOM05D006945 ORTHO05D005549 1.3e-16 90.1 104 40.4
BcaB03g12631 Brassica carinata HOM05D006945 ORTHO05D005549 2.2e-16 89.4 141 37.6
A03p60770 Brassica napus HOM05D006945 ORTHO05D005549 2.2e-16 89.4 127 37.8
Eucgr.C02228 Eucalyptus grandis HOM05D006945 ORTHO05D005549 2.9e-16 89.0 105 47.6
Eucgr.C02231 Eucalyptus grandis HOM05D006945 ORTHO05D005549 2.9e-16 89.0 105 47.6
Carub.0007s1053 Capsella rubella HOM05D006945 ORTHO05D005549 3.8e-16 88.6 131 38.9
AL8G19370 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 8.5e-16 87.4 133 34.6
AT5G42242 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 8.5e-16 87.4 129 36.4
FAN17G1318 Fragaria x ananassa HOM05D006945 ORTHO05D005549 8.5e-16 87.4 127 40.2
Sp5g15500 Schrenkiella parvula HOM05D006945 ORTHO05D005549 8.5e-16 87.4 133 34.6
A08p19440 Brassica napus HOM05D006945 ORTHO05D005549 1.1e-15 87.0 132 35.6
BraA08t33906Z Brassica rapa HOM05D006945 ORTHO05D005549 1.1e-15 87.0 132 35.6
Cpa.g.sc95.22 Carica papaya HOM05D006945 ORTHO05D005549 1.1e-15 87.0 115 37.4
BcaB03g12630 Brassica carinata HOM05D006945 ORTHO05D005549 1.5e-15 86.7 101 40.6
Carub.0004s0306 Capsella rubella HOM05D006945 ORTHO05D005549 1.5e-15 86.7 123 37.4
FvH4_4g06580 Fragaria vesca HOM05D006945 ORTHO05D005549 1.5e-15 86.7 127 40.2
Thhalv10000699m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 1.9e-15 86.3 104 41.3
Carub.0008s0696 Capsella rubella HOM05D006945 ORTHO05D005549 4.2e-15 85.1 134 33.6
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 5.5e-15 84.7 110 35.5
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 5.5e-15 84.7 110 35.5
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 5.5e-15 84.7 110 35.5
C06p15940 Brassica napus HOM05D006945 ORTHO05D005549 1.2e-14 83.6 131 34.4
BolC6t36786H Brassica oleracea HOM05D006945 ORTHO05D005549 1.2e-14 83.6 131 34.4
A03p59250 Brassica napus HOM05D006945 ORTHO05D005549 2.1e-14 82.8 127 33.9
BraA03t14982Z Brassica rapa HOM05D006945 ORTHO05D005549 2.1e-14 82.8 127 33.9
Glyma.15G164400 Glycine max HOM05D006945 ORTHO05D005549 2.1e-14 82.8 130 34.6
Lj6g0015237 Lotus japonicus HOM05D006945 ORTHO05D005549 2.1e-14 82.8 130 36.2
A03p59430 Brassica napus HOM05D006945 ORTHO05D005549 4.7e-14 81.6 131 34.4
Sp7g27900 Schrenkiella parvula HOM05D006945 ORTHO05D005549 4.7e-14 81.6 114 37.7
C03p88930 Brassica napus HOM05D006945 ORTHO05D005549 6.1e-14 81.3 132 34.1
BraA03t14999Z Brassica rapa HOM05D006945 ORTHO05D005549 8.0e-14 80.9 131 33.6
Eucgr.C02229 Eucalyptus grandis HOM05D006945 ORTHO05D005549 8.0e-14 80.9 132 40.9
BcaC02g10382 Brassica carinata HOM05D006945 ORTHO05D005549 1.4e-13 80.1 132 31.1
C07p58660 Brassica napus HOM05D006945 ORTHO05D005549 1.4e-13 80.1 131 34.4
BolC7t46316H Brassica oleracea HOM05D006945 ORTHO05D005549 1.4e-13 80.1 131 34.4
BcaNung00515 Brassica carinata HOM05D006945 ORTHO05D005549 1.8e-13 79.7 111 37.8
C07p57450 Brassica napus HOM05D006945 ORTHO05D005549 1.8e-13 79.7 131 33.6
BolC7t46213H Brassica oleracea HOM05D006945 ORTHO05D005549 1.8e-13 79.7 131 33.6
Sp7g27850 Schrenkiella parvula HOM05D006945 ORTHO05D005549 2.3e-13 79.3 120 33.3
AT5G38317 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 2.0e-12 76.3 135 29.6
A03p65360 Brassica napus HOM05D006945 ORTHO05D005549 2.0e-12 76.3 117 33.3
BcaC02g10381 Brassica carinata HOM05D006945 ORTHO05D005549 2.6e-12 75.9 132 30.3
C04p29510 Brassica napus HOM05D006945 ORTHO05D005549 2.6e-12 75.9 110 32.7
MELO3C003988.2 Cucumis melo HOM05D006945 ORTHO05D005549 2.6e-12 75.9 108 38.9
BraA03t15590Z Brassica rapa HOM05D006945 ORTHO05D005549 3.4e-12 75.5 128 31.2
BolC3t21204H Brassica oleracea HOM05D006945 ORTHO05D005549 7.5e-12 74.3 108 36.1
BcaC02g10365 Brassica carinata HOM05D006945 ORTHO05D005549 1.7e-11 73.2 110 31.8
Thhalv10026848m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 8.3e-11 70.9 125 32.0
TPR.G30224 Trifolium pratense HOM05D006945 ORTHO05D005549 1.4e-10 70.1 112 33.9
Thhalv10026783m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 1.8e-10 69.7 122 32.0
Gohir.A08G018400 Gossypium hirsutum HOM05D009688 ORTHO05D005549 2.4e-10 69.3 139 33.1
Medtr2g037190 Medicago truncatula HOM05D018581 ORTHO05D005549 2.4e-10 69.3 141 32.6
BolC4t24502H Brassica oleracea HOM05D006945 ORTHO05D005549 2.0e-09 66.2 110 30.0
TPR.G7879 Trifolium pratense HOM05D018581 ORTHO05D005549 2.0e-09 66.2 115 33.0
Sp7g27880 Schrenkiella parvula HOM05D006945 ORTHO05D005549 1.3e-08 63.5 95 33.7
Carub.0007s3775 Capsella rubella HOM05D006945 ORTHO05D005549 3.8e-08 62.0 132 30.3
CARHR214260 Cardamine hirsuta HOM05D006945 ORTHO05D005549 5.0e-08 61.6 98 36.7
CARHR237980 Cardamine hirsuta HOM05D006945 ORTHO05D005549 5.0e-08 61.6 101 34.7
Gohir.D08G029125 Gossypium hirsutum HOM05D009688 ORTHO05D005549 8.5e-08 60.8 118 32.2
Medtr2g037300 Medicago truncatula HOM05D009822 ORTHO05D011160 2.5e-07 59.3 132 31.8
TPR.G7878 Trifolium pratense HOM05D018581 ORTHO05D005549 4.2e-07 58.5 68 41.2
C07p57430 Brassica napus HOM05D006945 ORTHO05D005549 4.7e-06 55.1 123 30.9
TPR.G38489 Trifolium pratense HOM05D014986 ORTHO05D014232 8.0e-06 54.3 106 34.9


User provided reference genes

Program Settings