Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0155400 Rhododendron simsii HOM05D006945 ORTHO05D005549 9.8e-73 276.6 126 100.0
Rhsim13G0155500 Rhododendron simsii HOM05D006945 ORTHO05D005549 5.2e-42 174.5 127 64.6
AL7G22130 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 1.2e-17 93.6 107 42.1
AT4G30074 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 1.5e-17 93.2 133 38.3
Carub.0004s0716 Capsella rubella HOM05D006945 ORTHO05D005549 2.2e-16 89.4 128 35.9
BolC7t46664H Brassica oleracea HOM05D006945 ORTHO05D005549 2.9e-16 89.0 137 35.0
BcaNung02932 Brassica carinata HOM05D006945 ORTHO05D005549 4.9e-16 88.2 134 35.1
Carub.0005s0829 Capsella rubella HOM05D006945 ORTHO05D005549 4.9e-16 88.2 132 36.4
C07p62500 Brassica napus HOM05D006945 ORTHO05D005549 8.4e-16 87.4 136 34.6
Sp7g27870 Schrenkiella parvula HOM05D006945 ORTHO05D005549 8.4e-16 87.4 130 38.5
Sp7g27890 Schrenkiella parvula HOM05D006945 ORTHO05D005549 1.4e-15 86.7 133 34.6
BcaNung02066 Brassica carinata HOM05D006945 ORTHO05D005549 3.2e-15 85.5 137 35.0
BcaNung02068 Brassica carinata HOM05D006945 ORTHO05D005549 3.2e-15 85.5 137 35.0
Carub.0007s1058 Capsella rubella HOM05D006945 ORTHO05D005549 5.4e-15 84.7 132 34.1
Eucgr.C02226 Eucalyptus grandis HOM05D006945 ORTHO05D005549 5.4e-15 84.7 103 46.6
Thhalv10000699m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 5.4e-15 84.7 100 46.0
CARHR237970 Cardamine hirsuta HOM05D006945 ORTHO05D005549 7.1e-15 84.3 134 34.3
Thhalv10026566m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 1.2e-14 83.6 127 36.2
PGR044G0988 Punica granatum HOM05D006945 ORTHO05D005549 1.6e-14 83.2 126 40.5
AL7G52460 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 3.5e-14 82.0 111 39.6
Eucgr.C02232 Eucalyptus grandis HOM05D006945 ORTHO05D005549 3.5e-14 82.0 103 45.6
Medtr2g037190 Medicago truncatula HOM05D018581 ORTHO05D005549 1.3e-13 80.1 127 39.4
AT4G30070 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 1.7e-13 79.7 123 35.8
AL7G22140 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 6.6e-13 77.8 121 35.5
Eucgr.C02228 Eucalyptus grandis HOM05D006945 ORTHO05D005549 1.1e-12 77.0 102 46.1
Eucgr.C02231 Eucalyptus grandis HOM05D006945 ORTHO05D005549 1.1e-12 77.0 102 46.1
Lj6g0015237 Lotus japonicus HOM05D006945 ORTHO05D005549 1.5e-12 76.6 127 39.4
Sabra18G0112900 Salix brachista HOM05D009688 ORTHO05D005549 1.9e-12 76.3 121 39.7
Carub.0007s1055 Capsella rubella HOM05D006945 ORTHO05D005549 2.5e-12 75.9 125 32.0
BolC6t36787H Brassica oleracea HOM05D006945 ORTHO05D005549 9.6e-12 73.9 132 28.8
AT5G38330 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 1.3e-11 73.6 127 30.7
Carub.0007s1053 Capsella rubella HOM05D006945 ORTHO05D005549 1.3e-11 73.6 129 36.4
BcaC08g44188 Brassica carinata HOM05D006945 ORTHO05D005549 1.6e-11 73.2 134 28.4
A03p59420 Brassica napus HOM05D006945 ORTHO05D005549 2.1e-11 72.8 132 28.8
C07p57440 Brassica napus HOM05D006945 ORTHO05D005549 2.1e-11 72.8 134 30.6
Glyma.15G164400 Glycine max HOM05D006945 ORTHO05D005549 2.1e-11 72.8 130 34.6
BraA03t14998Z Brassica rapa HOM05D006945 ORTHO05D005549 3.6e-11 72.0 132 28.8
C06p15950 Brassica napus HOM05D006945 ORTHO05D005549 4.8e-11 71.6 101 32.7
Eucgr.C02229 Eucalyptus grandis HOM05D006945 ORTHO05D005549 8.1e-11 70.9 126 38.1
BolC7t46212H Brassica oleracea HOM05D006945 ORTHO05D005549 1.1e-10 70.5 134 29.9
MELO3C003988.2 Cucumis melo HOM05D006945 ORTHO05D005549 1.1e-10 70.5 106 35.8
CsaV3_2G008640 Cucumis sativus L. HOM05D006945 ORTHO05D005549 1.1e-10 70.5 137 32.1
A03p59240 Brassica napus HOM05D006945 ORTHO05D005549 1.4e-10 70.1 122 29.5
Potri.018G133200 Populus trichocarpa HOM05D009688 ORTHO05D005549 1.4e-10 70.1 120 37.5
A03p60770 Brassica napus HOM05D006945 ORTHO05D005549 3.1e-10 68.9 124 31.5
C06p15940 Brassica napus HOM05D006945 ORTHO05D005549 3.1e-10 68.9 128 31.2
BolC6t36786H Brassica oleracea HOM05D006945 ORTHO05D005549 3.1e-10 68.9 128 31.2
A03p59250 Brassica napus HOM05D006945 ORTHO05D005549 5.3e-10 68.2 124 30.6
BraA03t14982Z Brassica rapa HOM05D006945 ORTHO05D005549 5.3e-10 68.2 124 30.6
Carub.0004s0306 Capsella rubella HOM05D006945 ORTHO05D005549 6.9e-10 67.8 120 30.0
BcaNung00515 Brassica carinata HOM05D006945 ORTHO05D005549 1.5e-09 66.6 108 35.2
A03p59430 Brassica napus HOM05D006945 ORTHO05D005549 1.5e-09 66.6 128 30.5
BraA03t14999Z Brassica rapa HOM05D006945 ORTHO05D005549 1.5e-09 66.6 128 30.5
AL8G19370 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 2.0e-09 66.2 131 29.8
AT5G42242 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 2.0e-09 66.2 127 33.1
C07p58660 Brassica napus HOM05D006945 ORTHO05D005549 2.0e-09 66.2 129 31.8
BolC7t46316H Brassica oleracea HOM05D006945 ORTHO05D005549 2.0e-09 66.2 129 31.8
TPR.G7879 Trifolium pratense HOM05D018581 ORTHO05D005549 2.0e-09 66.2 124 33.1
Sp7g27850 Schrenkiella parvula HOM05D006945 ORTHO05D005549 2.6e-09 65.9 120 32.5
BcaNung00513 Brassica carinata HOM05D006945 ORTHO05D005549 3.4e-09 65.5 101 36.6
BcaNung00514 Brassica carinata HOM05D006945 ORTHO05D005549 3.4e-09 65.5 101 36.6
C07p57450 Brassica napus HOM05D006945 ORTHO05D005549 3.4e-09 65.5 128 30.5
BolC7t46213H Brassica oleracea HOM05D006945 ORTHO05D005549 3.4e-09 65.5 128 30.5
Sp7g27900 Schrenkiella parvula HOM05D006945 ORTHO05D005549 9.9e-09 63.9 111 32.4
TPR.G30224 Trifolium pratense HOM05D006945 ORTHO05D005549 9.9e-09 63.9 109 32.1
Medtr2g037085 Medicago truncatula HOM05D018581 ORTHO05D005549 2.2e-08 62.8 128 32.8
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 1.4e-07 60.1 107 29.9
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 1.4e-07 60.1 107 29.9
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 1.4e-07 60.1 107 29.9
BcaC02g10382 Brassica carinata HOM05D006945 ORTHO05D005549 4.2e-07 58.5 129 27.9
TPR.G7878 Trifolium pratense HOM05D018581 ORTHO05D005549 4.2e-07 58.5 93 34.4
Gohir.D08G029125 Gossypium hirsutum HOM05D009688 ORTHO05D005549 1.2e-06 57.0 131 32.8
AT5G38317 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 3.5e-06 55.5 132 25.0
TPR.G38489 Trifolium pratense HOM05D014986 ORTHO05D014232 7.9e-06 54.3 102 35.3


User provided reference genes

Program Settings