Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0149300 Rhododendron simsii HOM05D002373 ORTHO05D338411 1.1e-153 546.6 276 100.0
Hund22839 Selenicereus undatus HOM05D002373 ORTHO05D005805 2.7e-11 73.6 98 46.9
Rhsim04G0021600 Rhododendron simsii HOM05D002373 ORTHO05D005805 1.8e-10 70.9 56 66.1
Actinidia35248 Actinidia chinensis HOM05D002373 ORTHO05D015238 3.0e-10 70.1 67 55.2
Ah.04g164800 Amaranthus hybridus HOM05D002373 ORTHO05D005805 4.0e-10 69.7 83 49.4
vmacro09528 Vaccinium macrocarpon HOM05D002373 ORTHO05D005805 4.0e-10 69.7 67 59.7
PGSC0003DMG400012444 Solanum tuberosum HOM05D002373 ORTHO05D005805 5.2e-10 69.3 91 48.4
SGA_v2.0_scaffold73G24259 Striga asiatica HOM05D002373 ORTHO05D005805 5.2e-10 69.3 87 46.0
Dinv00353 Davidia involucrata HOM05D002373 ORTHO05D005805 8.8e-10 68.6 67 56.7
Dinv14923 Davidia involucrata HOM05D002373 ORTHO05D005805 8.8e-10 68.6 67 56.7
ECA240G3893 Erigeron canadensis HOM05D002373 ORTHO05D005805 8.8e-10 68.6 75 52.0
Hma1.2p1_0458F.1_g157050 Hydrangea macrophylla HOM05D002373 ORTHO05D005805 8.8e-10 68.6 60 60.0
CSS0014083 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 1.2e-09 68.2 83 48.2
Actinidia18767 Actinidia chinensis HOM05D002373 ORTHO05D005805 1.5e-09 67.8 65 58.5
ECA234G1789 Erigeron canadensis HOM05D002373 ORTHO05D005805 1.5e-09 67.8 54 64.8
Migut.M00800 Erythranthe guttata HOM05D002373 ORTHO05D005805 1.5e-09 67.8 68 55.9
Gohir.D01G049600 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.5e-09 67.8 50 70.0
Gorai.002G069500 Gossypium raimondii HOM05D002373 ORTHO05D005805 1.5e-09 67.8 50 70.0
RcHm_v2.0_Chr5g0033231 Rosa chinensis HOM05D002373 ORTHO05D005805 1.5e-09 67.8 75 48.0
Sc01g0008920 Simmondsia chinensis HOM05D002373 ORTHO05D005805 1.5e-09 67.8 82 51.2
Potri.011G118500 Populus trichocarpa HOM05D002373 ORTHO05D005805 2.0e-09 67.4 54 64.8
Sabra11G0103400 Salix brachista HOM05D002373 ORTHO05D005805 2.0e-09 67.4 54 64.8
Cc05_g11960 Coffea canephora HOM05D002373 ORTHO05D005805 2.6e-09 67.0 82 47.6
FAN25G1482 Fragaria x ananassa HOM05D002373 ORTHO05D005805 2.6e-09 67.0 81 49.4
Lsat_1_v5_gn_5_128020 Lactuca sativa HOM05D002373 ORTHO05D005805 2.6e-09 67.0 62 58.1
SalBow6G1433 Salvia bowleyana HOM05D002373 ORTHO05D005805 2.6e-09 67.0 62 59.7
SalBow6G5097 Salvia bowleyana HOM05D002373 ORTHO05D005805 2.6e-09 67.0 62 59.7
TAR627G0461 Trochodendron aralioides HOM05D002373 ORTHO05D005805 2.6e-09 67.0 73 50.7
Ah.06g184400 Amaranthus hybridus HOM05D002373 ORTHO05D005805 3.4e-09 66.6 71 53.5
MSTRG.12904 Avicennia marina HOM05D002373 ORTHO05D015238 3.4e-09 66.6 68 54.4
CSS0013354 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 3.4e-09 66.6 67 53.7
CSS0025198 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 3.4e-09 66.6 67 53.7
CDE10G0260 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 3.4e-09 66.6 74 54.1
Duzib213G0111 Durio zibethinus HOM05D002373 ORTHO05D005805 3.4e-09 66.6 48 70.8
THA.LOC104818083 Tarenaya hassleriana HOM05D002373 ORTHO05D005805 3.4e-09 66.6 76 52.6
Thecc.07G091400 Theobroma cacao HOM05D002373 ORTHO05D005805 3.4e-09 66.6 48 70.8
HPP92_006380 Vanilla planifolia HOM05D002373 ORTHO05D005805 3.4e-09 66.6 46 73.9
Zm00001eb371030 Zea mays HOM05D002373 ORTHO05D005805 3.4e-09 66.6 46 73.9
AUR62039199 Chenopodium quinoa HOM05D002373 ORTHO05D005805 4.4e-09 66.2 85 47.1
SHI19230 Sapria himalayana HOM05D002373 ORTHO05D005805 4.4e-09 66.2 75 52.0
CANSAT56G0489 Cannabis sativa HOM05D002373 ORTHO05D005805 5.7e-09 65.9 75 49.3
Nn1g04126 Nelumbo nucifera HOM05D002373 ORTHO05D005805 5.7e-09 65.9 52 63.5
MSTRG.15235 Avicennia marina HOM05D002373 ORTHO05D005805 7.5e-09 65.5 69 56.5
CAN.G162.52 Capsicum annuum HOM05D002373 ORTHO05D005805 7.5e-09 65.5 57 59.6
Ciclev10007467m.g Citrus clementina HOM05D002373 ORTHO05D005805 7.5e-09 65.5 65 56.9
COL.COLO4_27181 Corchorus olitorius HOM05D002373 ORTHO05D005805 7.5e-09 65.5 78 51.3
Lalb_Chr03g0030661 Lupinus albus HOM05D002373 ORTHO05D005805 7.5e-09 65.5 47 70.2
unitig_26.g9526 Utricularia gibba HOM05D002373 ORTHO05D005805 7.5e-09 65.5 82 50.0
AL1G61500 Arabidopsis lyrata HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
AT1G53140 Arabidopsis thaliana HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
BcaC08g44046 Brassica carinata HOM05D002373 ORTHO05D005805 9.8e-09 65.1 70 52.9
C06p14470 Brassica napus HOM05D002373 ORTHO05D005805 9.8e-09 65.1 70 52.9
BolC6t36627H Brassica oleracea HOM05D002373 ORTHO05D005805 9.8e-09 65.1 70 52.9
CSS0015785 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 9.8e-09 65.1 83 47.0
Carub.0001s4230 Capsella rubella HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Cfa020575 Carpinus fangiana HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
CiPaw.12G118900 Carya illinoinensis HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
AUR62019435 Chenopodium quinoa HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
ClCG11G018040 Citrullus lanatus HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
MELO3C016695.2 Cucumis melo HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
CsaV3_4G033660 Cucumis sativus L. HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Dinv20180 Davidia involucrata HOM05D002373 ORTHO05D005805 9.8e-09 65.1 76 50.0
FvH4_3g19810 Fragaria vesca HOM05D002373 ORTHO05D005805 9.8e-09 65.1 81 48.1
FAN11G0806 Fragaria x ananassa HOM05D002373 ORTHO05D005805 9.8e-09 65.1 81 48.1
MBI07_g30194_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Manes.15G087600 Manihot esculenta HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
PSO832G3381 Papaver somniferum HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Peaxi162Scf00069g00161 Petunia axillaris HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Sp1g39690 Schrenkiella parvula HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Sed0011872 Sechium edule HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Sed0015726 Sechium edule HOM05D002373 ORTHO05D005805 9.8e-09 65.1 47 70.2
Ca_23054_v3 Cicer arietinum L. HOM05D002373 ORTHO05D005805 1.3e-08 64.7 47 70.2
Lj3g0007605 Lotus japonicus HOM05D002373 ORTHO05D005805 1.3e-08 64.7 47 70.2
Lalb_Chr01g0016831 Lupinus albus HOM05D002373 ORTHO05D005805 1.3e-08 64.7 57 59.6
Medtr8g463270 Medicago truncatula HOM05D002373 ORTHO05D005805 1.3e-08 64.7 47 70.2
PSO210G2728 Papaver somniferum HOM05D002373 ORTHO05D005805 1.3e-08 64.7 47 70.2
TPR.G22533 Trifolium pratense HOM05D002373 ORTHO05D005805 1.3e-08 64.7 47 70.2
TWI38G2145 Tripterygium wilfordii HOM05D002373 ORTHO05D005805 1.3e-08 64.7 60 58.3
arahy.Tifrunner.gnm1.ann1.YQ4YNY Arachis hypogaea HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
A05p18610 Brassica napus HOM05D002373 ORTHO05D005805 1.7e-08 64.3 76 51.3
BraA05t20752Z Brassica rapa HOM05D002373 ORTHO05D005805 1.7e-08 64.3 76 51.3
Haze_09436 Corylus avellana HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
Lsat_1_v5_gn_9_97921 Lactuca sativa HOM05D002373 ORTHO05D005805 1.7e-08 64.3 90 45.6
Lj8A155T98 Lonicera japonica HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
Nitab4.5_0001241g0050 Nicotiana tabacum HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
Nitab4.5_0001336g0070 Nicotiana tabacum HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
Os01g0748000 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
Sopen07g031270 Solanum pennellii HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
Zm00001eb153090 Zea mays HOM05D002373 ORTHO05D005805 1.7e-08 64.3 46 71.7
ATR0737G089 Amborella trichopoda HOM05D002373 ORTHO05D005805 2.2e-08 63.9 74 48.6
arahy.Tifrunner.gnm1.ann1.7QC79Z Arachis hypogaea HOM05D002373 ORTHO05D005805 2.2e-08 63.9 62 56.5
Eucgr.F03311 Eucalyptus grandis HOM05D002373 ORTHO05D005805 2.2e-08 63.9 75 52.0
HanXRQChr12g0361121 Helianthus annuus HOM05D002373 ORTHO05D005805 2.2e-08 63.9 47 68.1
PGR031G0335 Punica granatum HOM05D002373 ORTHO05D005805 2.2e-08 63.9 82 48.8
GSVIVG01014319001 Vitis vinifera HOM05D002373 ORTHO05D005805 2.2e-08 63.9 75 53.3
Aa31LG10G1990 Aethionema arabicum HOM05D002373 ORTHO05D005805 2.8e-08 63.5 70 51.4
Aqoxy4G00738 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 2.8e-08 63.5 47 68.1
CiPaw.11G170300 Carya illinoinensis HOM05D002373 ORTHO05D005805 2.8e-08 63.5 47 68.1
FAN16G1089 Fragaria x ananassa HOM05D002373 ORTHO05D005805 2.8e-08 63.5 47 68.1
Glyma.12G152100 Glycine max HOM05D002373 ORTHO05D005805 2.8e-08 63.5 82 47.6
MD03G1228500 Malus domestica HOM05D002373 ORTHO05D005805 2.8e-08 63.5 47 68.1
QL08p022123 Quercus lobata HOM05D002373 ORTHO05D005805 2.8e-08 63.5 54 64.8
Atru.chr2.2485 Acer truncatum HOM05D002373 ORTHO05D005805 3.7e-08 63.2 74 52.7
CARHR043360 Cardamine hirsuta HOM05D002373 ORTHO05D005805 3.7e-08 63.2 72 51.4
Cpa.g.sc80.74 Carica papaya HOM05D002373 ORTHO05D005805 3.7e-08 63.2 88 46.6
Gohir.D05G352400 Gossypium hirsutum HOM05D002373 ORTHO05D005805 3.7e-08 63.2 67 53.7
Psat4g163960 Pisum sativum HOM05D002373 ORTHO05D005805 3.7e-08 63.2 75 50.7
EL10Ac4g08196 Beta vulgaris HOM05D002373 ORTHO05D005805 4.8e-08 62.8 70 50.0
DCAR_013112 Daucus carota HOM05D002373 ORTHO05D005805 4.8e-08 62.8 84 46.4
Thhalv10011245m.g Eutrema salsugineum HOM05D002373 ORTHO05D005805 4.8e-08 62.8 72 50.0
Glyma.06G240400 Glycine max HOM05D002373 ORTHO05D005805 6.3e-08 62.4 82 47.6
Gohir.A04G032200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 6.3e-08 62.4 46 69.6
HanXRQChr10g0305641 Helianthus annuus HOM05D002373 ORTHO05D005805 6.3e-08 62.4 47 66.0
Prupe.4G180200 Prunus persica HOM05D002373 ORTHO05D005805 8.3e-08 62.0 76 47.4
FAN21G3426 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.1e-07 61.6 47 66.0
VMungo1127G0771 Vigna mungo HOM05D002373 ORTHO05D005805 1.1e-07 61.6 47 66.0
SEGI_09406 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 1.4e-07 61.2 66 48.5
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 2.4e-07 60.5 44 70.5
Gorai.009G384500 Gossypium raimondii HOM05D002373 ORTHO05D005805 3.1e-07 60.1 67 52.2
PSO782G4223 Papaver somniferum HOM05D002373 ORTHO05D005805 3.1e-07 60.1 47 63.8
HanXRQChr10g0302701 Helianthus annuus HOM05D002373 ORTHO05D005805 4.1e-07 59.7 75 48.0
Pp3c13_12110 Physcomitrium patens HOM05D002373 ORTHO05D005805 4.1e-07 59.7 86 41.9
BcaB02g10930 Brassica carinata HOM05D002373 ORTHO05D015238 7.0e-07 58.9 69 49.3
CDE10G0842 Ceratophyllum demersum HOM05D002373 ORTHO05D015238 7.0e-07 58.9 62 51.6
Mapoly0084s0004 Marchantia polymorpha HOM05D002373 ORTHO05D005805 7.0e-07 58.9 46 65.2
Pp3c17_9580 Physcomitrium patens HOM05D002373 ORTHO05D005805 7.0e-07 58.9 47 63.8
Phvul.011G158800 Phaseolus vulgaris HOM05D002373 ORTHO05D005805 9.1e-07 58.5 47 63.8
AagrBONN_evm.TU.Sc2ySwM_368.419 Anthoceros agrestis HOM05D002373 ORTHO05D005805 2.0e-06 57.4 46 60.9
SMO364G0144 Selaginella moellendorffii HOM05D002373 ORTHO05D005805 3.5e-06 56.6 46 63.0
vmacro04367 Vaccinium macrocarpon HOM05D000524 ORTHO05D000381 3.5e-06 56.6 35 77.1
Actinidia37939 Actinidia chinensis HOM05D000524 ORTHO05D000381 4.5e-06 56.2 75 46.7
Cre12.g529450 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D005805 7.7e-06 55.5 61 49.2
Sed0013140 Sechium edule HOM05D000524 ORTHO05D000381 7.7e-06 55.5 82 39.0


User provided reference genes

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