Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.6e-203 711.8 355 100.0
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 2.2e-178 629.0 370 86.5
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 5.2e-156 554.7 348 81.0
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.4e-147 525.0 359 74.1
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 4.9e-146 521.5 350 76.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.2e-144 516.9 361 74.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.2e-144 516.9 361 74.0
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 3.5e-144 515.4 345 73.3
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 6.0e-144 514.6 358 72.9
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 7.8e-144 514.2 359 71.6
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 1.7e-143 513.1 324 79.6
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 2.3e-143 512.7 368 70.9
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.3e-143 512.7 359 71.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 5.1e-143 511.5 356 73.0
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 8.7e-143 510.8 352 70.5
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 8.7e-143 510.8 366 69.9
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 6.2e-141 504.6 357 71.7
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.8e-140 503.1 363 71.9
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 5.3e-140 501.5 367 68.7
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 6.9e-140 501.1 357 71.7
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 4.4e-139 498.4 354 70.6
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 5.8e-139 498.0 363 69.1
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.7e-138 496.5 366 69.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.7e-138 496.5 364 70.3
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 2.2e-138 496.1 358 70.4
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 4.9e-138 495.0 310 77.7
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 6.4e-138 494.6 369 66.7
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 8.4e-138 494.2 351 71.2
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 1.1e-137 493.8 355 70.7
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.4e-137 493.4 354 71.8
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.4e-137 492.7 375 66.9
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.4e-137 492.7 355 70.4
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 7.1e-137 491.1 362 68.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 9.3e-137 490.7 368 68.2
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 9.3e-137 490.7 363 68.9
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.2e-136 490.3 358 70.7
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.6e-136 490.0 353 71.1
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.1e-136 489.6 356 69.9
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.7e-135 486.5 308 74.4
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 3.9e-135 485.3 303 77.2
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.1e-134 483.8 359 68.5
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 5.6e-134 481.5 326 72.4
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.6e-133 479.9 307 75.2
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.8e-133 479.2 320 73.8
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.6e-133 478.8 355 69.9
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 4.8e-133 478.4 356 69.7
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 8.1e-133 477.6 360 68.9
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 3.1e-132 475.7 331 73.1
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.0e-132 475.3 357 68.9
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.0e-132 475.3 355 69.6
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 5.3e-132 474.9 317 74.1
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 9.0e-132 474.2 359 68.0
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 1.2e-131 473.8 326 73.0
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.2e-131 473.8 369 67.8
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.5e-131 473.4 325 72.6
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.5e-131 473.4 361 67.3
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.0e-131 473.0 360 68.9
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.6e-131 472.6 339 69.6
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.7e-130 469.9 313 73.8
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 2.9e-130 469.2 317 72.9
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 4.9e-130 468.4 312 73.1
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 4.9e-130 468.4 312 71.5
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 6.4e-130 468.0 355 68.5
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 8.4e-130 467.6 365 66.6
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.1e-129 467.2 344 69.5
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.1e-129 467.2 312 73.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 1.9e-129 466.5 331 72.5
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 2.4e-129 466.1 353 68.0
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.4e-129 466.1 323 72.1
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.2e-129 465.3 355 67.6
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 5.4e-129 464.9 348 69.3
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 4.6e-128 461.8 304 74.0
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 6.0e-128 461.5 314 72.0
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.3e-127 460.3 363 66.9
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 3.0e-127 459.1 355 66.5
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 5.1e-127 458.4 367 66.5
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.5e-126 456.8 311 73.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 2.5e-126 456.1 314 73.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 5.6e-126 454.9 319 70.5
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 2.8e-125 452.6 346 67.1
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 8.1e-125 451.1 285 76.8
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.1e-124 450.7 362 64.4
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 1.4e-124 450.3 352 67.3
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.4e-124 450.3 355 66.2
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.2e-123 447.2 349 66.2
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 4.5e-123 445.3 318 68.6
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 9.9e-123 444.1 304 71.4
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 2.9e-122 442.6 302 73.5
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.8e-119 433.3 340 66.2
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 7.4e-118 427.9 316 67.4
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.1e-116 424.1 226 87.2
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.8e-116 423.3 312 69.2
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 5.3e-116 421.8 354 61.9
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.2e-115 420.6 398 58.3
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 7.6e-115 417.9 323 66.6
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 3.8e-114 415.6 325 65.2
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.1e-113 414.1 304 68.4
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.8e-108 396.7 287 71.8
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.2e-107 394.0 300 65.0
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 5.9e-107 391.7 379 56.2
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.7e-106 390.2 293 68.3
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 6.5e-106 388.3 317 62.1
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.9e-105 386.7 258 71.3
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.6e-104 382.5 300 65.3
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.0e-103 379.4 333 59.2
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 6.3e-101 371.7 270 67.8
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.6e-96 357.1 282 65.2
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.3e-93 347.4 227 73.1
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 6.3e-93 345.1 285 63.5
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 2.9e-90 336.3 258 67.1
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 3.0e-87 326.2 356 53.4
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 9.7e-86 321.2 278 63.7
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.7e-85 320.5 239 72.4
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 6.1e-80 302.0 300 55.0
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 4.5e-75 285.8 236 64.4
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 9.8e-70 268.1 241 61.0
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.3e-69 267.7 292 48.6
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.2e-69 266.9 214 60.3
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.4e-63 247.7 205 57.1
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 4.4e-62 242.7 224 54.9
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.7e-62 242.3 201 57.2
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 7.5e-62 241.9 200 57.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.8e-61 240.0 190 60.5
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.1e-57 228.0 222 53.2
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.0e-51 207.2 355 39.7
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 2.7e-51 206.8 210 49.5
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 3.5e-51 206.5 291 45.7
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 3.1e-47 193.4 111 81.1
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 5.4e-44 182.6 216 53.7
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.6e-38 163.7 170 50.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 9.9e-38 161.8 106 67.0
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 2.1e-35 154.1 101 70.3
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.7e-35 153.7 104 66.3
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 1.2e-30 138.3 112 61.6
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.4e-28 130.6 68 85.3
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 9.0e-23 112.1 115 53.0
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 4.2e-20 103.2 138 49.3
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 2.7e-19 100.5 94 61.7
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 8.7e-18 95.5 101 52.5
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.5e-17 94.7 65 64.6
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.2e-14 85.1 49 75.5
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 2.9e-13 80.5 37 91.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 8.4e-13 79.0 81 49.4
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 7.4e-09 65.9 71 52.1
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 7.6e-06 55.8 40 55.0


User provided reference genes

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