Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 2.6e-138 495.4 249 100.0
Rhsim13G0105900 Rhododendron simsii HOM05D018324 ORTHO05D019455 1.1e-38 164.5 177 55.4
Rhsim12G0093000 Rhododendron simsii HOM05D018324 ORTHO05D019455 2.1e-26 123.6 150 51.3
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 8.8e-25 118.2 61 96.7
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 4.8e-23 112.5 61 91.8
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.0e-20 104.8 61 85.2
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-20 104.4 61 82.0
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-20 104.4 61 82.0
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.3e-20 104.4 61 82.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.3e-20 104.4 61 82.0
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.3e-20 104.4 61 82.0
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.2e-20 103.6 61 82.0
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 3.8e-20 102.8 61 80.3
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 5.0e-20 102.4 61 80.3
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 6.5e-20 102.1 61 80.3
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.5e-20 102.1 61 80.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 8.5e-20 101.7 61 78.7
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.1e-19 101.3 61 82.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.1e-19 101.3 61 78.7
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.4e-19 100.9 61 82.0
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.9e-19 100.5 61 78.7
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.9e-19 100.5 61 78.7
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.9e-19 100.5 58 79.3
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.5e-19 100.1 61 80.3
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 3.2e-19 99.8 61 78.7
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 5.5e-19 99.0 61 77.0
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 5.5e-19 99.0 61 75.4
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 7.2e-19 98.6 61 77.0
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 7.2e-19 98.6 61 75.4
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 9.4e-19 98.2 61 77.0
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 9.4e-19 98.2 58 77.6
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.6e-18 97.4 58 81.0
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.6e-18 97.4 58 81.0
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.6e-18 97.4 61 77.0
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 73.8
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 73.8
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 73.8
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 73.8
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 73.8
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 75.4
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.1e-18 97.1 61 75.4
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 2.7e-18 96.7 57 84.2
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.7e-18 96.7 61 73.8
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.6e-18 96.3 61 77.0
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 3.6e-18 96.3 61 72.1
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 3.6e-18 96.3 61 75.4
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 78.7
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 75.4
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 75.4
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 75.4
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 73.8
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 4.7e-18 95.9 177 41.8
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 73.8
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 73.8
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 4.7e-18 95.9 61 73.8
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 6.1e-18 95.5 61 75.4
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.1e-18 95.5 58 79.3
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 6.1e-18 95.5 61 73.8
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 8.0e-18 95.1 61 73.8
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 73.8
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 77.0
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 75.4
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 70.5
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 77.0
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 77.0
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.0e-17 94.7 61 77.0
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 1.4e-17 94.4 61 75.4
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.4e-17 94.4 58 79.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.8e-17 94.0 61 73.8
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.8e-17 94.0 62 75.8
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.8e-17 94.0 61 73.8
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.3e-17 93.6 61 75.4
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 75.4
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 72.1
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.3e-17 93.6 57 75.4
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 72.1
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 75.4
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 75.4
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 75.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 75.4
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 75.4
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 72.1
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.3e-17 93.6 61 72.1
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 70.5
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 70.5
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 72.1
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 70.5
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 72.1
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 68.9
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.0e-17 93.2 61 77.0
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 3.9e-17 92.8 61 73.8
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 3.9e-17 92.8 61 73.8
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 6.7e-17 92.0 58 75.9
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 8.8e-17 91.7 61 73.8
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 8.8e-17 91.7 61 73.8
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.1e-16 91.3 59 69.5
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.0e-16 90.5 61 72.1
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.0e-16 90.5 61 72.1
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.6e-16 90.1 61 70.5
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.6e-16 90.1 61 70.5
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 2.6e-16 90.1 99 55.6
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 4.4e-16 89.4 61 72.1
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 4.4e-16 89.4 61 68.9
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 9.7e-16 88.2 58 70.7
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.3e-15 87.8 61 70.5
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.1e-14 84.7 54 75.9
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.4e-14 84.3 61 63.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.4e-14 84.3 55 70.9
Rhsim06G0088700 Rhododendron simsii HOM05D018324 ORTHO05D019455 1.2e-13 81.3 50 84.0
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.0e-13 80.5 42 90.5
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.5e-11 74.3 57 63.2
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.9e-11 73.9 58 63.8
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 7.2e-11 72.0 46 69.6
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 7.2e-11 72.0 48 70.8
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 7.2e-11 72.0 58 62.1
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.4e-11 71.6 55 61.8
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.4e-11 71.6 55 61.8
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.1e-10 70.5 47 70.2
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 1.8e-09 67.4 58 55.2
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 5.2e-09 65.9 44 75.0
Rhsim03G0134800 Rhododendron simsii HOM05D018324 ORTHO05D019455 1.2e-08 64.7 197 33.5
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 2.0e-08 63.9 55 52.7
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.3e-08 63.2 52 55.8
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 9.7e-08 61.6 55 54.5
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.3e-07 61.2 42 66.7
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.3e-07 61.2 54 55.6
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.7e-07 60.8 60 50.0
Rhsim03G0105500 Rhododendron simsii HOM05D018324 ORTHO05D019455 1.1e-06 58.2 76 50.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.4e-06 57.0 40 62.5
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.1e-06 56.6 52 50.0
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 7.0e-06 55.5 48 56.2


User provided reference genes

Program Settings