Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.7e-71 271.6 147 100.0
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 2.6e-61 238.8 119 98.3
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 1.9e-51 206.1 117 87.2
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 3.2e-51 205.3 125 81.6
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 2.0e-48 196.1 123 80.5
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 4.4e-48 194.9 117 79.5
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.2e-47 192.6 119 80.7
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 8.2e-47 190.7 116 80.2
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 1.1e-46 190.3 126 77.8
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 5.3e-46 188.0 119 76.5
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 5.3e-46 188.0 121 77.7
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 5.3e-46 188.0 118 78.8
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 7.0e-46 187.6 122 77.0
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 7.0e-46 187.6 120 78.3
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 7.0e-46 187.6 120 78.3
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 9.1e-46 187.2 119 78.2
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.6e-45 185.7 117 76.9
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.0e-44 183.7 120 77.5
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 1.3e-44 183.3 117 76.9
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 1.3e-44 183.3 121 76.0
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 1.7e-44 183.0 117 75.2
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 2.2e-44 182.6 106 81.1
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.8e-44 181.8 119 73.9
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 6.5e-44 181.0 120 73.3
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.4e-43 179.9 117 74.4
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 3.2e-43 178.7 119 75.6
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 3.2e-43 178.7 118 72.0
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 3.2e-43 178.7 118 75.4
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 4.2e-43 178.3 125 73.6
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 4.2e-43 178.3 120 74.2
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 5.5e-43 177.9 123 75.6
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 7.2e-43 177.6 109 78.9
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 9.4e-43 177.2 116 77.6
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 1.6e-42 176.4 122 76.2
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 2.1e-42 176.0 100 82.0
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 2.7e-42 175.6 117 73.5
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 2.7e-42 175.6 123 71.5
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 4.7e-42 174.9 121 74.4
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 4.7e-42 174.9 121 73.6
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 1.0e-41 173.7 100 80.0
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.4e-41 173.3 92 87.0
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 2.3e-41 172.6 124 73.4
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 3.0e-41 172.2 124 72.6
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 3.0e-41 172.2 124 72.6
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 3.0e-41 172.2 94 84.0
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 3.0e-41 172.2 121 71.9
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 3.9e-41 171.8 126 71.4
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 8.8e-41 170.6 121 71.9
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 8.8e-41 170.6 124 71.8
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 8.8e-41 170.6 122 70.5
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 8.8e-41 170.6 124 69.4
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 1.1e-40 170.2 126 69.8
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 1.5e-40 169.9 121 71.1
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.5e-40 169.9 130 67.7
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 2.0e-40 169.5 123 72.4
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.0e-40 169.5 99 80.8
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 4.4e-40 168.3 118 72.9
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 4.4e-40 168.3 118 72.9
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 4.4e-40 168.3 86 89.5
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 5.7e-40 167.9 121 70.2
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 7.4e-40 167.5 119 71.4
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 7.4e-40 167.5 118 72.0
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 9.7e-40 167.2 121 68.6
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 2.2e-39 166.0 119 70.6
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 2.2e-39 166.0 119 70.6
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 2.2e-39 166.0 124 68.5
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 2.8e-39 165.6 124 67.7
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 3.7e-39 165.2 124 69.4
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 3.7e-39 165.2 111 73.9
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 8.2e-39 164.1 124 69.4
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 8.2e-39 164.1 106 74.5
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 4.1e-38 161.8 122 68.0
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 5.3e-38 161.4 101 75.2
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 7.0e-38 161.0 88 86.4
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 7.0e-38 161.0 105 72.4
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.2e-37 160.2 125 65.6
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 1.6e-37 159.8 121 66.9
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.6e-37 159.8 116 72.4
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 2.0e-37 159.5 105 72.4
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 2.6e-37 159.1 124 64.5
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 2.9e-36 155.6 117 69.2
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 5.0e-36 154.8 85 83.5
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 7.2e-35 151.0 85 81.2
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 2.1e-34 149.4 99 74.7
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 3.1e-30 135.6 164 48.8
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 5.3e-30 134.8 88 72.7
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 9.1e-30 134.0 86 76.7
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 2.2e-28 129.4 87 69.0
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 3.2e-27 125.6 85 69.4
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 6.8e-25 117.9 99 63.6
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 2.6e-24 115.9 86 69.8
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 1.3e-23 113.6 95 66.3
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 5.9e-21 104.8 77 71.4
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.3e-20 102.8 77 70.1
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 5.0e-20 101.7 76 72.4
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 1.5e-19 100.1 82 63.4
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 2.5e-19 99.4 77 66.2
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.2e-18 97.1 78 64.1
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.8e-17 93.2 97 55.7
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 2.0e-16 89.7 79 57.0
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 7.5e-16 87.8 84 61.9
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 2.4e-14 82.8 41 85.4
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.6e-13 80.1 84 52.4
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 3.5e-13 79.0 45 82.2
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.8e-13 77.8 81 54.3
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 5.8e-08 61.6 91 47.3
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.9e-06 56.6 31 74.2


User provided reference genes

Program Settings