Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0145000 Rhododendron simsii HOM05D001778 ORTHO05D030540 1.1e-69 266.5 133 100.0
Rhsim04G0186500 Rhododendron simsii HOM05D000118 ORTHO05D000098 4.8e-46 188.0 95 95.8
Rhsim07G0141300 Rhododendron simsii HOM05D001778 ORTHO05D005872 1.2e-44 183.3 95 91.6
Rhsim05G0198700 Rhododendron simsii HOM05D000030 ORTHO05D030540 4.8e-38 161.4 76 100.0
Rhsim05G0209500 Rhododendron simsii HOM05D001778 ORTHO05D030540 8.8e-24 114.0 66 86.4
CSS0047621 Camellia sinensis var. sinensis HOM05D001778 ORTHO05D005872 2.8e-22 109.0 96 55.2
Dinv37445 Davidia involucrata HOM05D001778 ORTHO05D005872 8.3e-22 107.5 84 63.1
Dinv09422 Davidia involucrata HOM05D001778 ORTHO05D005872 4.1e-21 105.1 84 64.3
CSS0021828 Camellia sinensis var. sinensis HOM05D001778 ORTHO05D005872 1.2e-20 103.6 96 54.2
Actinidia30333 Actinidia chinensis HOM05D001778 ORTHO05D005872 3.5e-20 102.1 94 55.3
Lj8C369T4 Lonicera japonica HOM05D001778 ORTHO05D005872 1.1e-18 97.1 94 51.1
GSVIVG01036912001 Vitis vinifera HOM05D001778 ORTHO05D005872 1.1e-18 97.1 95 50.5
CiPaw.11G077400 Carya illinoinensis HOM05D001778 ORTHO05D005872 4.2e-18 95.1 88 53.4
vmacro00111 Vaccinium macrocarpon HOM05D001778 ORTHO05D005872 9.5e-18 94.0 104 45.2
Cfa012632 Carpinus fangiana HOM05D001778 ORTHO05D005872 8.0e-17 90.9 87 51.7
Prupe.5G015800 Prunus persica HOM05D001778 ORTHO05D005872 4.0e-16 88.6 95 49.5
Potri.001G127100 Populus trichocarpa HOM05D001778 ORTHO05D005872 5.2e-16 88.2 97 46.4
Hma1.2p1_0262F.1_g105213 Hydrangea macrophylla HOM05D001778 ORTHO05D005872 8.9e-16 87.4 89 56.2
RcHm_v2.0_Chr7g0214911 Rosa chinensis HOM05D001778 ORTHO05D005872 1.2e-15 87.0 98 45.9
Sabra01G0098000 Salix brachista HOM05D001778 ORTHO05D005872 1.5e-15 86.7 97 46.4
Haze_08034 Corylus avellana HOM05D001778 ORTHO05D005872 3.4e-15 85.5 87 49.4
CiPaw.12G053400 Carya illinoinensis HOM05D001778 ORTHO05D005872 4.4e-15 85.1 88 47.7
Hma1.2p1_1969F.1_g309500 Hydrangea macrophylla HOM05D001778 ORTHO05D005872 4.4e-15 85.1 89 55.1
Nn3g19165 Nelumbo nucifera HOM05D001778 ORTHO05D005872 9.8e-15 84.0 86 50.0
TAR629G1808 Trochodendron aralioides HOM05D001778 ORTHO05D005872 9.8e-15 84.0 84 52.4
Sed0011927 Sechium edule HOM05D001778 ORTHO05D005872 2.2e-14 82.8 104 44.2
Manes.17G002200 Manihot esculenta HOM05D001778 ORTHO05D005872 4.9e-14 81.6 78 53.8
Glyma.01G151700 Glycine max HOM05D001778 ORTHO05D005872 6.3e-14 81.3 81 49.4
Hund14314 Selenicereus undatus HOM05D001778 ORTHO05D005872 1.1e-13 80.5 97 41.2
FvH4_5g24480 Fragaria vesca HOM05D001778 ORTHO05D005872 1.4e-13 80.1 98 44.9
FAN18G0495 Fragaria x ananassa HOM05D001778 ORTHO05D005872 1.4e-13 80.1 98 44.9
FAN13G1529 Fragaria x ananassa HOM05D001778 ORTHO05D005872 1.8e-13 79.7 98 43.9
Sabra03G0073400 Salix brachista HOM05D001778 ORTHO05D005872 1.8e-13 79.7 96 45.8
MD06G1013000 Malus domestica HOM05D001778 ORTHO05D005872 3.2e-13 79.0 77 49.4
MELO3C016212.2 Cucumis melo HOM05D001778 ORTHO05D005872 7.0e-13 77.8 95 44.2
FAN13G0610 Fragaria x ananassa HOM05D001778 ORTHO05D005872 7.0e-13 77.8 98 43.9
Potri.003G106600 Populus trichocarpa HOM05D001778 ORTHO05D005872 7.0e-13 77.8 96 42.7
Eucgr.D02574 Eucalyptus grandis HOM05D001778 ORTHO05D005872 9.2e-13 77.4 96 40.6
FAN04G2563 Fragaria x ananassa HOM05D001778 ORTHO05D005872 9.2e-13 77.4 98 42.9
FAN08G2077 Fragaria x ananassa HOM05D001778 ORTHO05D005872 9.2e-13 77.4 98 43.9
TWI60G1341 Tripterygium wilfordii HOM05D001778 ORTHO05D005872 1.2e-12 77.0 95 44.2
ClCG07G011180 Citrullus lanatus HOM05D001778 ORTHO05D005872 1.6e-12 76.6 95 43.2
CsaV3_4G007070 Cucumis sativus L. HOM05D001778 ORTHO05D005872 1.6e-12 76.6 95 43.2
Nitab4.5_0000623g0050 Nicotiana tabacum HOM05D001778 ORTHO05D005872 2.0e-12 76.3 74 52.7
Ah.02g116320 Amaranthus hybridus HOM05D007105 ORTHO05D009304 4.5e-12 75.1 81 49.4
Actinidia01233 Actinidia chinensis HOM05D001778 ORTHO05D005872 5.9e-12 74.7 99 46.5
PGR031G1520 Punica granatum HOM05D001778 ORTHO05D005872 5.9e-12 74.7 85 50.6
Sopen08g023710 Solanum pennellii HOM05D001778 ORTHO05D005872 5.9e-12 74.7 74 54.1
Ah.12g058300 Amaranthus hybridus HOM05D000027 ORTHO05D005872 7.8e-12 74.3 76 48.7
Solyc08g075080.3 Solanum lycopersicum HOM05D001778 ORTHO05D005872 7.8e-12 74.3 74 54.1
PGSC0003DMG400020819 Solanum tuberosum HOM05D001778 ORTHO05D005872 1.3e-11 73.6 74 51.4
Lalb_Chr16g0380521 Lupinus albus HOM05D001778 ORTHO05D005872 2.3e-11 72.8 81 48.1
Sed0015190 Sechium edule HOM05D001778 ORTHO05D005872 2.9e-11 72.4 106 39.6
TPR.G30317 Trifolium pratense HOM05D001778 ORTHO05D005872 2.9e-11 72.4 94 41.5
TWI32G0519 Tripterygium wilfordii HOM05D001778 ORTHO05D005872 2.9e-11 72.4 97 41.2
AUR62010503 Chenopodium quinoa HOM05D001778 ORTHO05D005872 5.0e-11 71.6 78 50.0
AUR62017397 Chenopodium quinoa HOM05D001778 ORTHO05D005872 5.0e-11 71.6 83 47.0
Glyma.09G216900 Glycine max HOM05D001778 ORTHO05D005872 8.6e-11 70.9 81 46.9
Nitab4.5_0007008g0010 Nicotiana tabacum HOM05D001778 ORTHO05D005872 2.5e-10 69.3 74 51.4
arahy.Tifrunner.gnm1.ann1.M8SWBU Arachis hypogaea HOM05D001778 ORTHO05D005872 3.3e-10 68.9 86 46.5
arahy.Tifrunner.gnm1.ann1.STSP6P Arachis hypogaea HOM05D001778 ORTHO05D005872 3.3e-10 68.9 86 46.5
MSTRG.11845 Avicennia marina HOM05D001778 ORTHO05D005872 3.3e-10 68.9 87 43.7
Glyma.16G076000 Glycine max HOM05D001778 ORTHO05D005872 3.3e-10 68.9 78 47.4
Phvul.002G123800 Phaseolus vulgaris HOM05D001778 ORTHO05D005872 4.3e-10 68.6 81 46.9
Cpa.g.sc24.54 Carica papaya HOM05D001778 ORTHO05D005872 5.6e-10 68.2 77 45.5
Glyma.16G107700 Glycine max HOM05D001778 ORTHO05D005872 5.6e-10 68.2 78 46.2
VMungo1215G1640 Vigna mungo HOM05D000351 ORTHO05D005872 5.6e-10 68.2 81 46.9
arahy.Tifrunner.gnm1.ann1.5S904D Arachis hypogaea HOM05D001778 ORTHO05D005872 7.3e-10 67.8 86 45.3
arahy.Tifrunner.gnm1.ann1.70U8WL Arachis hypogaea HOM05D002877 ORTHO05D015430 7.3e-10 67.8 86 45.3
Cc08_g04610 Coffea canephora HOM05D001778 ORTHO05D005872 1.2e-09 67.0 78 46.2
Lalb_Chr09g0325111 Lupinus albus HOM05D001778 ORTHO05D005872 1.2e-09 67.0 81 48.1
Rhsim05G0198800 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-09 67.0 36 86.1
EL10Ac5g12604 Beta vulgaris HOM05D001778 ORTHO05D005872 2.1e-09 66.2 83 44.6
Medtr5g026260 Medicago truncatula HOM05D001778 ORTHO05D005872 2.8e-09 65.9 81 44.4
Phvul.003G277700 Phaseolus vulgaris HOM05D001778 ORTHO05D005872 2.8e-09 65.9 79 43.0
SGA_v2.0_scaffold89G27359 Striga asiatica HOM05D001778 ORTHO05D005872 3.6e-09 65.5 87 41.4
Ciclev10000893m.g Citrus clementina HOM05D001778 ORTHO05D005872 6.1e-09 64.7 96 38.5
Lj2g0013343 Lotus japonicus HOM05D001778 ORTHO05D005872 6.1e-09 64.7 81 48.1
Peaxi162Scf00014g01720 Petunia axillaris HOM05D001778 ORTHO05D005872 8.0e-09 64.3 70 48.6
Migut.A00487 Erythranthe guttata HOM05D001778 ORTHO05D005872 2.3e-08 62.8 92 41.3
Lsat_1_v5_gn_6_74361 Lactuca sativa HOM05D001778 ORTHO05D005872 2.3e-08 62.8 93 41.9
MSTRG.25757 Avicennia marina HOM05D001778 ORTHO05D005872 3.1e-08 62.4 91 41.8
Psat2g144280 Pisum sativum HOM05D001778 ORTHO05D005872 3.4e-07 58.9 81 40.7
Sc07g0008150 Simmondsia chinensis HOM05D001778 ORTHO05D005872 3.4e-07 58.9 83 38.6
MD16G1287000 Malus domestica HOM05D001778 ORTHO05D005872 2.9e-06 55.8 77 36.4
Ca_22469_v3 Cicer arietinum L. HOM05D001778 ORTHO05D005872 4.9e-06 55.1 78 39.7
VMungo0251G2978 Vigna mungo HOM05D001778 ORTHO05D005872 4.9e-06 55.1 86 38.4


User provided reference genes

Program Settings