Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.1e-309 1064.3 544 100.0
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.3e-266 921.0 544 84.2
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 5.4e-253 877.5 526 82.1
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.7e-251 872.5 524 83.4
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.8e-249 865.1 532 82.3
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.6e-249 864.8 535 81.3
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.1e-248 863.2 537 80.4
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.3e-248 862.1 531 81.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.8e-247 857.4 532 81.8
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 6.4e-246 854.0 530 80.9
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 8.3e-246 853.6 524 81.5
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 7.1e-245 850.5 530 81.3
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 4.6e-244 847.8 523 80.9
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.3e-243 846.3 538 78.6
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.9e-243 844.7 528 79.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.7e-241 837.8 527 79.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 4.4e-239 831.2 527 79.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-238 829.7 529 78.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.7e-238 829.3 528 78.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.9e-238 828.6 520 80.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.1e-237 823.9 531 77.6
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.6e-236 822.8 530 81.3
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.5e-234 816.2 544 75.6
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 6.2e-233 810.8 546 74.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 8.1e-233 810.4 531 75.7
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 8.1e-233 810.4 531 76.6
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 5.2e-232 807.7 526 77.4
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.6e-231 805.4 519 79.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 9.9e-231 803.5 529 76.7
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.9e-230 802.0 533 76.5
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 6.4e-230 800.8 508 79.3
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.4e-229 798.9 464 84.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.2e-229 798.1 463 85.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 7.1e-229 797.3 522 76.8
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.2e-228 796.6 525 76.8
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.7e-228 795.4 538 74.2
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.7e-228 795.4 528 76.7
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 4.6e-228 794.7 523 75.3
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 7.8e-228 793.9 522 76.6
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.8e-228 793.9 528 77.7
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.3e-227 793.1 524 75.6
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.3e-227 792.3 522 76.2
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-227 792.3 522 76.2
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.3e-227 792.3 522 76.2
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 8.7e-227 790.4 523 75.9
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.1e-226 790.0 525 76.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.9e-226 789.3 535 75.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.5e-226 788.9 520 76.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.3e-226 788.5 521 75.8
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 4.3e-226 788.1 526 75.7
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 4.3e-226 788.1 529 75.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 5.6e-226 787.7 522 75.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 7.3e-226 787.3 524 74.8
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 7.3e-226 787.3 525 76.8
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 9.6e-226 786.9 522 75.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 9.6e-226 786.9 522 75.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 9.6e-226 786.9 524 76.1
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-225 786.2 529 74.7
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.6e-225 786.2 524 76.1
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.1e-225 785.8 526 75.1
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-225 785.0 529 74.9
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 3.6e-225 785.0 521 75.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.8e-225 784.6 521 75.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.8e-224 782.7 518 77.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.8e-224 782.7 529 74.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.8e-224 782.7 513 75.4
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-224 781.6 529 74.3
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 6.9e-224 780.8 523 74.6
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 9.0e-224 780.4 526 74.5
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 9.0e-224 780.4 525 73.7
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 9.0e-224 780.4 528 75.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-223 780.0 526 74.1
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.5e-223 778.1 519 74.2
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.7e-222 776.2 517 75.2
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.9e-222 775.4 517 74.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.4e-221 773.1 515 75.0
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.4e-221 773.1 519 73.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.4e-221 772.3 521 75.2
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.6e-220 769.6 520 76.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.7e-220 768.8 492 78.0
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 3.5e-220 768.5 476 80.9
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.3e-219 765.8 529 73.2
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-218 762.7 517 74.3
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.5e-218 762.3 492 77.2
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 9.6e-218 760.4 503 76.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.3e-217 760.0 519 73.2
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.8e-217 758.1 529 73.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.4e-214 747.7 436 85.1
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 8.4e-214 747.3 523 73.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.4e-213 746.5 452 84.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.9e-210 736.1 519 70.1
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 4.8e-209 731.5 520 69.2
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.2e-209 731.1 406 89.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.8e-208 729.6 529 70.7
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-207 726.9 524 69.8
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 4.5e-207 724.9 521 69.9
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-206 723.8 524 69.7
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.3e-206 723.4 521 69.7
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.9e-206 721.5 524 70.2
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.2e-205 718.8 519 69.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.2e-204 716.8 521 67.9
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.1e-204 716.1 526 69.4
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.5e-204 715.3 536 69.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 7.9e-204 714.1 529 67.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 7.9e-204 714.1 521 68.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.3e-203 712.6 518 67.6
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 3.7e-201 705.3 517 68.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.0e-195 687.2 531 63.8
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.4e-195 686.8 465 73.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.8e-193 679.1 429 79.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 6.9e-192 674.5 461 72.2
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.7e-187 657.9 396 82.1
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 2.4e-184 649.4 515 63.1
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 4.1e-184 648.7 528 61.0
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.2e-181 639.0 531 61.4
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 9.4e-181 637.5 499 62.5
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 7.4e-178 627.9 385 80.8
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-171 607.1 521 60.5
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.3e-166 590.5 461 65.5
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-162 576.2 520 58.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 8.0e-156 554.7 395 69.4
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.1e-152 544.3 381 70.1
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.7e-150 537.0 323 81.4
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.5e-149 533.1 362 74.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.6e-140 503.8 341 73.0
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.1e-135 486.9 472 50.4
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.1e-134 482.3 325 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.3e-131 473.4 548 46.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 7.5e-130 468.4 455 51.4
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.1e-117 427.9 562 40.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.5e-109 401.0 543 40.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.2e-104 383.3 224 84.8
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.3e-99 365.9 246 74.8
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.5e-77 293.9 194 74.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.8e-70 268.9 188 73.4
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.1e-64 251.9 180 72.2
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 5.5e-64 249.6 142 85.9
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-62 245.0 154 77.3
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 5.5e-56 223.0 156 72.4
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.0e-54 218.8 173 63.6
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.1e-51 207.2 140 75.0
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 4.7e-47 193.4 160 61.9
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 9.5e-40 169.1 131 64.1
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.0e-34 151.4 97 77.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.5e-32 144.4 149 53.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.6e-26 125.2 110 59.1
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 2.5e-24 117.9 74 77.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.0e-21 108.2 498 24.5
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 7.1e-19 99.8 71 66.2
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.2e-18 99.0 464 25.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.4e-13 80.9 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.4e-13 80.9 67 58.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.3e-08 63.9 50 58.0
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 7.3e-08 63.2 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 7.3e-08 63.2 45 62.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 9.6e-08 62.8 45 60.0


User provided reference genes

Program Settings