Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0136600 Rhododendron simsii HOM05D000361 ORTHO05D023782 3.0e-131 471.9 236 100.0
vmacro03573 Vaccinium macrocarpon HOM05D000361 ORTHO05D008294 2.3e-27 126.7 93 77.4
Rhsim13G0136200 Rhododendron simsii HOM05D000361 ORTHO05D008294 1.2e-26 124.4 93 76.3
Ciclev10014269m.g Citrus clementina HOM05D000361 ORTHO05D008294 3.5e-23 112.8 92 68.5
CiPaw.09G140700 Carya illinoinensis HOM05D000361 ORTHO05D008294 4.6e-23 112.5 93 67.7
Sabra01G0052300 Salix brachista HOM05D000361 ORTHO05D008294 4.6e-23 112.5 102 63.7
CANSAT35G1399 Cannabis sativa HOM05D000361 ORTHO05D008294 6.0e-23 112.1 101 63.4
Sc24g0002810 Simmondsia chinensis HOM05D000361 ORTHO05D008294 6.0e-23 112.1 94 70.2
Cpa.g.sc30.68 Carica papaya HOM05D000361 ORTHO05D008294 1.0e-22 111.3 92 68.5
MD05G1242400 Malus domestica HOM05D000361 ORTHO05D008294 1.0e-22 111.3 99 64.6
MD10G1224200 Malus domestica HOM05D000361 ORTHO05D008294 1.0e-22 111.3 99 64.6
Nn1g09868 Nelumbo nucifera HOM05D000361 ORTHO05D008294 1.0e-22 111.3 93 65.6
Potri.001G074000 Populus trichocarpa HOM05D000361 ORTHO05D008294 1.3e-22 110.9 102 62.7
Ca_17753_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008294 1.7e-22 110.5 92 65.2
FvH4_3g13360 Fragaria vesca HOM05D000361 ORTHO05D008294 1.7e-22 110.5 102 62.7
FAN11G3268 Fragaria x ananassa HOM05D000361 ORTHO05D008294 1.7e-22 110.5 102 62.7
FAN16G0385 Fragaria x ananassa HOM05D000361 ORTHO05D008294 1.7e-22 110.5 102 62.7
FAN21G0569 Fragaria x ananassa HOM05D000361 ORTHO05D008294 1.7e-22 110.5 102 62.7
FAN25G0043 Fragaria x ananassa HOM05D000361 ORTHO05D008294 1.7e-22 110.5 102 62.7
FAN25G0195 Fragaria x ananassa HOM05D000361 ORTHO05D008294 1.7e-22 110.5 102 62.7
TAR627G0013 Trochodendron aralioides HOM05D000361 ORTHO05D008294 1.7e-22 110.5 93 67.7
Haze_05186 Corylus avellana HOM05D000361 ORTHO05D008294 3.0e-22 109.8 93 67.7
Manes.16G060200 Manihot esculenta HOM05D000361 ORTHO05D008294 3.9e-22 109.4 93 66.7
QL11p010760 Quercus lobata HOM05D000361 ORTHO05D008294 5.0e-22 109.0 93 64.5
arahy.Tifrunner.gnm1.ann1.QR0DXW Arachis hypogaea HOM05D000361 ORTHO05D008294 6.6e-22 108.6 92 64.1
Thecc.02G000800 Theobroma cacao HOM05D000361 ORTHO05D008294 6.6e-22 108.6 92 65.2
CSS0044464 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008294 8.6e-22 108.2 93 64.5
TPR.G6256 Trifolium pratense HOM05D000361 ORTHO05D008294 8.6e-22 108.2 92 64.1
Cfa001165 Carpinus fangiana HOM05D000361 ORTHO05D008294 1.1e-21 107.8 93 66.7
MBI06_g26561_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D008294 1.1e-21 107.8 93 65.6
Medtr8g090000 Medicago truncatula HOM05D000361 ORTHO05D008294 1.1e-21 107.8 92 64.1
Prupe.4G121000 Prunus persica HOM05D000361 ORTHO05D008294 1.1e-21 107.8 102 60.8
GSVIVG01003253001 Vitis vinifera HOM05D000361 ORTHO05D008294 1.1e-21 107.8 93 65.6
arahy.Tifrunner.gnm1.ann1.76Y6MV Arachis hypogaea HOM05D000361 ORTHO05D008294 1.9e-21 107.1 92 63.0
Lj6g0011881 Lotus japonicus HOM05D000361 ORTHO05D008294 1.9e-21 107.1 92 65.2
Medtr2g437540 Medicago truncatula HOM05D000361 ORTHO05D008294 1.9e-21 107.1 98 63.3
RcHm_v2.0_Chr5g0022071 Rosa chinensis HOM05D000361 ORTHO05D008294 1.9e-21 107.1 102 61.8
Lalb_Chr18g0051851 Lupinus albus HOM05D000361 ORTHO05D008294 2.5e-21 106.7 92 63.0
Phvul.009G245600 Phaseolus vulgaris HOM05D000361 ORTHO05D008294 2.5e-21 106.7 92 65.2
Psat7g056760 Pisum sativum HOM05D000361 ORTHO05D008294 2.5e-21 106.7 92 63.0
Peaxi162Scf00036g00321 Petunia axillaris HOM05D000361 ORTHO05D008294 4.3e-21 105.9 93 62.4
Duzib132G1205 Durio zibethinus HOM05D000361 ORTHO05D008294 7.3e-21 105.1 92 64.1
PSO541G2719 Papaver somniferum HOM05D000361 ORTHO05D008294 7.3e-21 105.1 92 67.4
PSO541G6368 Papaver somniferum HOM05D000361 ORTHO05D008294 7.3e-21 105.1 92 67.4
PSO675G8445 Papaver somniferum HOM05D000361 ORTHO05D008294 7.3e-21 105.1 92 67.4
Hund20134 Selenicereus undatus HOM05D000361 ORTHO05D008294 7.3e-21 105.1 94 64.9
TWI63G1117 Tripterygium wilfordii HOM05D000361 ORTHO05D008294 7.3e-21 105.1 93 61.3
Eucgr.D00002 Eucalyptus grandis HOM05D000361 ORTHO05D008294 1.6e-20 104.0 93 63.4
Dinv07937 Davidia involucrata HOM05D000361 ORTHO05D008294 2.1e-20 103.6 93 65.6
Dinv18416 Davidia involucrata HOM05D000361 ORTHO05D008294 2.1e-20 103.6 93 65.6
VMungo1309G2334 Vigna mungo HOM05D000361 ORTHO05D008294 3.6e-20 102.8 92 63.0
Ah.15g091830 Amaranthus hybridus HOM05D000361 ORTHO05D008294 4.7e-20 102.4 94 62.8
CAN.G809.9 Capsicum annuum HOM05D000361 ORTHO05D008294 6.2e-20 102.1 93 60.2
Solyc02g082180.3 Solanum lycopersicum HOM05D000361 ORTHO05D008294 6.2e-20 102.1 93 62.4
Sopen02g026840 Solanum pennellii HOM05D000361 ORTHO05D008294 6.2e-20 102.1 93 62.4
CsaV3_6G053180 Cucumis sativus L. HOM05D000361 ORTHO05D008294 8.1e-20 101.7 100 59.0
Nitab4.5_0001815g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008294 8.1e-20 101.7 93 61.3
Nitab4.5_0007687g0010 Nicotiana tabacum HOM05D000361 ORTHO05D008294 8.1e-20 101.7 93 61.3
AUR62042103 Chenopodium quinoa HOM05D000361 ORTHO05D008294 1.4e-19 100.9 94 63.8
Glyma.09G047300 Glycine max HOM05D000361 ORTHO05D008294 1.4e-19 100.9 92 60.9
PGR044G0817 Punica granatum HOM05D000361 ORTHO05D008294 1.4e-19 100.9 93 63.4
PGSC0003DMG400013633 Solanum tuberosum HOM05D000361 ORTHO05D008294 1.4e-19 100.9 93 61.3
Gohir.D02G240100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 1.8e-19 100.5 92 60.9
ECA240G0581 Erigeron canadensis HOM05D000361 ORTHO05D008294 2.3e-19 100.1 92 62.0
Glyma.15G154900 Glycine max HOM05D000361 ORTHO05D008294 2.3e-19 100.1 95 57.9
Atru.chr10.231 Acer truncatum HOM05D000361 ORTHO05D008294 3.1e-19 99.8 92 62.0
EL10Ac7g17302 Beta vulgaris HOM05D000361 ORTHO05D008294 3.1e-19 99.8 94 62.8
CDE10G0589 Ceratophyllum demersum HOM05D000361 ORTHO05D008294 3.1e-19 99.8 94 64.9
AUR62040986 Chenopodium quinoa HOM05D000361 ORTHO05D008294 3.1e-19 99.8 94 62.8
Gorai.005G268500 Gossypium raimondii HOM05D000361 ORTHO05D008294 3.1e-19 99.8 92 60.9
AL8G14990 Arabidopsis lyrata HOM05D000361 ORTHO05D008294 4.0e-19 99.4 92 59.8
BcaC06g31601 Brassica carinata HOM05D000361 ORTHO05D008294 5.2e-19 99.0 92 59.8
A06p47040 Brassica napus HOM05D000361 ORTHO05D008294 5.2e-19 99.0 92 59.8
C07p27530 Brassica napus HOM05D000361 ORTHO05D008294 5.2e-19 99.0 92 59.8
BolC7t43284H Brassica oleracea HOM05D000361 ORTHO05D008294 5.2e-19 99.0 92 59.8
BraA06t27577Z Brassica rapa HOM05D000361 ORTHO05D008294 5.2e-19 99.0 92 59.8
AT5G44635 Arabidopsis thaliana HOM05D000361 ORTHO05D008294 6.8e-19 98.6 92 59.8
BcaC06g34528 Brassica carinata HOM05D000361 ORTHO05D008294 6.8e-19 98.6 92 59.8
Carub.0008s0363 Capsella rubella HOM05D000361 ORTHO05D008294 6.8e-19 98.6 92 59.8
Sp2g09450 Schrenkiella parvula HOM05D000361 ORTHO05D008294 6.8e-19 98.6 92 59.8
CARHR178260 Cardamine hirsuta HOM05D000361 ORTHO05D008294 8.9e-19 98.2 92 59.8
Sed0009371 Sechium edule HOM05D000361 ORTHO05D008294 1.5e-18 97.4 100 56.0
Cc09_g04600 Coffea canephora HOM05D000361 ORTHO05D008294 2.0e-18 97.1 92 60.9
Thhalv10000779m.g Eutrema salsugineum HOM05D000361 ORTHO05D008294 2.0e-18 97.1 92 59.8
HanXRQChr07g0187741 Helianthus annuus HOM05D000361 ORTHO05D008294 2.0e-18 97.1 94 61.7
Lj1C1152G4 Lonicera japonica HOM05D000361 ORTHO05D008294 2.0e-18 97.1 101 58.4
Lsat_1_v5_gn_9_100181 Lactuca sativa HOM05D000361 ORTHO05D008294 2.6e-18 96.7 94 62.8
THA.LOC104811945 Tarenaya hassleriana HOM05D000361 ORTHO05D008294 2.6e-18 96.7 92 59.8
DCAR_003731 Daucus carota HOM05D000361 ORTHO05D008294 3.4e-18 96.3 93 62.4
Oeu039911.1 Olea europaea HOM05D000361 ORTHO05D008294 9.8e-18 94.7 92 58.7
Aa31LG9G8530 Aethionema arabicum HOM05D000361 ORTHO05D008294 2.9e-17 93.2 92 57.6
COL.COLO4_25023 Corchorus olitorius HOM05D000361 ORTHO05D008294 2.9e-17 93.2 92 63.0
Migut.H01418 Erythranthe guttata HOM05D000361 ORTHO05D008294 2.9e-17 93.2 93 61.3
MSTRG.13294 Avicennia marina HOM05D000361 ORTHO05D008294 4.9e-17 92.4 93 58.1
Gohir.A03G218100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 6.4e-17 92.0 88 59.1
Aqoxy1G01354 Aquilegia oxysepala HOM05D000361 ORTHO05D008294 1.1e-16 91.3 92 57.6
Os05g0235800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008294 1.1e-16 91.3 101 52.5
HPP92_000506 Vanilla planifolia HOM05D000361 ORTHO05D008294 1.1e-16 91.3 92 55.4
SGA_v2.0_scaffold341G49368 Striga asiatica HOM05D000361 ORTHO05D008294 1.9e-16 90.5 93 60.2
SHI08119 Sapria himalayana HOM05D000361 ORTHO05D008294 3.2e-16 89.7 92 58.7
BolC2t10553H Brassica oleracea HOM05D000361 ORTHO05D008294 7.1e-16 88.6 92 52.2
A02p28500 Brassica napus HOM05D000361 ORTHO05D023782 1.2e-15 87.8 93 54.8
BraA02t07885Z Brassica rapa HOM05D000361 ORTHO05D023782 1.2e-15 87.8 93 54.8
SalBow6G3398 Salvia bowleyana HOM05D000361 ORTHO05D008294 1.6e-15 87.4 91 58.2
SalBow6G5453 Salvia bowleyana HOM05D000361 ORTHO05D008294 1.6e-15 87.4 91 58.2
BcaC03g16683 Brassica carinata HOM05D000361 ORTHO05D008294 2.1e-15 87.0 92 52.2
C02p45220 Brassica napus HOM05D000361 ORTHO05D008294 2.1e-15 87.0 92 51.1
Zm00001eb284360 Zea mays HOM05D000361 ORTHO05D008294 2.7e-15 86.7 99 53.5
SEGI_18737 Sequoiadendron giganteum HOM05D000361 ORTHO05D008294 8.6e-14 81.6 93 51.6
arahy.Tifrunner.gnm1.ann1.NRBM4R Arachis hypogaea HOM05D000361 ORTHO05D023782 9.5e-13 78.2 68 58.8
ClCG01G025960 Citrullus lanatus HOM05D000361 ORTHO05D008294 9.5e-13 78.2 101 47.5
ATR0737G139 Amborella trichopoda HOM05D000361 ORTHO05D008294 4.7e-12 75.9 92 48.9
TPR.G22262 Trifolium pratense HOM05D000361 ORTHO05D023782 1.1e-11 74.7 71 54.9
unitig_37.g13054 Utricularia gibba HOM05D000361 ORTHO05D008294 1.4e-11 74.3 92 53.3
SMO364G0539 Selaginella moellendorffii HOM05D000361 ORTHO05D008294 6.8e-11 72.0 91 52.7
Zm00001eb350340 Zea mays HOM05D000361 ORTHO05D008294 1.5e-10 70.9 83 50.6
MELO3C006995.2 Cucumis melo HOM05D000361 ORTHO05D008294 6.4e-09 65.5 91 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1744 Anthoceros agrestis HOM05D000361 ORTHO05D008294 2.4e-08 63.5 87 46.0
Mapoly0119s0016 Marchantia polymorpha HOM05D000361 ORTHO05D008294 1.2e-07 61.2 89 47.2
CBR_g12702 Chara braunii HOM05D000361 ORTHO05D008294 3.9e-06 56.2 88 45.5


User provided reference genes

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