Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 7.2e-62 240.4 117 100.0
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 7.2e-62 240.4 117 100.0
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 6.6e-39 164.1 98 83.7
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 2.5e-38 162.2 98 81.6
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 2.1e-37 159.1 98 78.6
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 6.8e-36 154.1 98 77.6
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 2.0e-35 152.5 98 77.6
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 2.0e-35 152.5 99 75.8
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 2.6e-35 152.1 98 76.5
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.6e-35 152.1 98 77.6
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 4.4e-35 151.4 95 77.9
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 5.7e-35 151.0 98 74.5
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 7.5e-35 150.6 98 75.5
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 7.5e-35 150.6 98 75.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 7.5e-35 150.6 98 76.5
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 7.5e-35 150.6 98 73.5
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 9.8e-35 150.2 98 77.6
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 9.8e-35 150.2 98 76.5
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 9.8e-35 150.2 98 74.5
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.7e-34 149.4 98 72.4
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 1.7e-34 149.4 98 74.5
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.2e-34 149.1 98 78.6
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 2.8e-34 148.7 98 75.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 3.7e-34 148.3 99 74.7
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 3.7e-34 148.3 98 74.5
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 3.7e-34 148.3 98 74.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.7e-34 148.3 98 77.6
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 6.3e-34 147.5 98 73.5
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.3e-34 147.1 95 76.8
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 8.3e-34 147.1 98 73.5
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.1e-33 146.7 98 74.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.1e-33 146.7 98 75.5
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.1e-33 146.7 98 76.5
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.4e-33 146.4 98 75.5
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.8e-33 146.0 99 73.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.4e-33 145.6 96 75.0
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 2.4e-33 145.6 99 73.7
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 2.4e-33 145.6 98 74.5
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 3.1e-33 145.2 99 72.7
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 4.1e-33 144.8 98 73.5
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 4.1e-33 144.8 98 74.5
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 4.1e-33 144.8 98 73.5
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 4.1e-33 144.8 95 73.7
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 7.0e-33 144.1 99 72.7
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.2e-32 143.3 98 71.4
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.2e-32 143.3 99 71.7
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.2e-32 143.3 99 70.7
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.6e-32 142.9 98 71.4
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 1.6e-32 142.9 98 71.4
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 3.5e-32 141.7 98 71.4
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 3.5e-32 141.7 98 71.4
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 3.5e-32 141.7 99 69.7
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 3.5e-32 141.7 99 69.7
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 3.5e-32 141.7 98 71.4
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 4.5e-32 141.4 98 71.4
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 5.9e-32 141.0 99 70.7
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 7.8e-32 140.6 98 70.4
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.0e-31 140.2 94 72.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.0e-31 140.2 98 70.4
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.0e-31 140.2 98 70.4
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.0e-31 140.2 98 70.4
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.0e-31 140.2 98 70.4
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.0e-31 140.2 98 70.4
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.0e-31 140.2 94 73.4
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.0e-31 140.2 96 71.9
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.7e-31 139.4 98 70.4
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.7e-31 139.4 99 70.7
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 2.3e-31 139.0 98 70.4
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 2.3e-31 139.0 98 70.4
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.3e-31 139.0 99 68.7
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.3e-31 139.0 98 70.4
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.3e-31 139.0 99 70.7
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 2.3e-31 139.0 95 71.6
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 2.9e-31 138.7 98 69.4
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 2.9e-31 138.7 99 71.7
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.9e-31 138.7 99 71.7
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.9e-31 138.7 99 71.7
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.9e-31 138.7 99 71.7
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 2.9e-31 138.7 99 69.7
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 2.9e-31 138.7 94 72.3
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 3.8e-31 138.3 97 71.1
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 5.0e-31 137.9 95 72.6
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 5.0e-31 137.9 95 72.6
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 5.0e-31 137.9 98 69.4
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.6e-31 137.5 95 72.6
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 8.6e-31 137.1 98 68.4
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 8.6e-31 137.1 98 68.4
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 8.6e-31 137.1 98 68.4
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-30 136.7 97 70.1
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 2.5e-30 135.6 98 68.4
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 2.5e-30 135.6 90 73.3
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 3.3e-30 135.2 95 71.6
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.3e-30 135.2 98 68.4
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 3.3e-30 135.2 98 68.4
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 4.3e-30 134.8 94 70.2
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 7.3e-30 134.0 117 61.5
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 7.3e-30 134.0 98 69.4
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 7.3e-30 134.0 99 67.7
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 9.5e-30 133.7 98 67.3
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 9.5e-30 133.7 98 67.3
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 9.5e-30 133.7 94 70.2
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 9.5e-30 133.7 100 70.0
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.2e-29 133.3 96 67.7
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.2e-29 133.3 96 66.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.6e-29 132.9 90 72.2
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.6e-29 132.9 93 71.0
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.6e-29 132.9 94 71.3
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 2.1e-29 132.5 94 70.2
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.8e-29 132.1 95 67.4
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 4.7e-29 131.3 98 67.3
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 6.1e-29 131.0 93 68.8
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.0e-28 130.2 94 69.1
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.4e-28 129.8 97 66.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 3.0e-28 128.6 98 65.3
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 3.0e-28 128.6 99 63.6
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 8.9e-28 127.1 98 64.3
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 8.9e-28 127.1 98 64.3
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-27 126.3 96 66.7
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-27 125.9 96 66.7
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 7.5e-27 124.0 96 65.6
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 7.5e-27 124.0 96 65.6
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 9.8e-27 123.6 96 65.6
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 6.4e-26 120.9 75 74.7
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.5e-24 115.2 98 64.3
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.0e-23 113.6 97 63.9
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 4.3e-22 108.2 78 64.1
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.8e-20 102.8 87 63.2
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 2.6e-19 99.0 70 65.7
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 5.8e-19 97.8 74 62.2
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.2e-18 95.9 70 65.7
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 3.7e-18 95.1 71 64.8
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 4.9e-18 94.7 155 40.0
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.1e-17 93.6 74 59.5
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.4e-17 93.2 74 59.5
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 4.1e-17 91.7 70 61.4
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 5.1e-15 84.7 83 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 3.3e-14 82.0 83 54.2
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 7.3e-14 80.9 98 50.0
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 7.3e-14 80.9 57 70.2
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.8e-13 79.0 97 44.3
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.8e-11 71.2 93 46.2
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 5.8e-11 71.2 81 49.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 9.9e-11 70.5 45 73.3
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 6.4e-10 67.8 62 51.6
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 3.0e-07 58.9 84 47.6
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-06 57.0 69 44.9


User provided reference genes

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