Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0222400 Rhododendron simsii HOM05D011115 ORTHO05D013345 6.9e-83 310.5 142 100.0
Rhsim13G0130500 Rhododendron simsii HOM05D011115 ORTHO05D013345 6.9e-83 310.5 142 100.0
Rhsim11G0034200 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.9e-80 302.4 142 96.5
Rhsim01G0025700 Rhododendron simsii HOM05D011115 ORTHO05D013345 2.4e-80 302.0 142 95.8
RhsimUnG0069000 Rhododendron simsii HOM05D011115 ORTHO05D013345 9.9e-74 280.0 142 87.3
Rhsim12G0123400 Rhododendron simsii HOM05D011115 ORTHO05D013345 3.8e-73 278.1 135 94.8
Rhsim01G0180000 Rhododendron simsii HOM05D011115 ORTHO05D013345 3.2e-72 275.0 142 90.8
Rhsim04G0188700 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.8e-70 269.2 142 83.8
Rhsim04G0132700 Rhododendron simsii HOM05D011115 ORTHO05D013345 2.1e-68 262.3 126 96.0
Rhsim08G0085600 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.6e-47 193.0 88 97.7
Rhsim04G0133300 Rhododendron simsii HOM05D011115 ORTHO05D013345 2.6e-42 175.6 88 86.4
Rhsim09G0028400 Rhododendron simsii HOM05D011115 ORTHO05D013345 3.8e-41 171.8 89 86.5
Rhsim02G0039800 Rhododendron simsii HOM05D011115 ORTHO05D013345 2.7e-39 165.6 77 96.1
Rhsim03G0124800 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.3e-36 156.8 90 76.7
Rhsim02G0174200 Rhododendron simsii HOM05D011115 ORTHO05D013345 1.6e-34 149.8 125 48.8
Rhsim09G0116500 Rhododendron simsii HOM05D011115 ORTHO05D013345 8.8e-30 134.0 124 54.8
Rhsim08G0166600 Rhododendron simsii HOM05D011115 ORTHO05D013345 3.8e-25 118.6 103 51.5
vmacro19568 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 4.2e-16 88.6 130 33.1
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.6e-15 86.7 127 29.1
Actinidia26110 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.6e-15 86.7 127 29.1
vmacro15090 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.6e-15 86.7 125 30.4
CSS0013775 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 8.0e-15 84.3 129 31.8
Actinidia33700 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.4e-14 83.6 130 30.8
Rhsim02G0110600 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.8e-14 83.2 128 29.7
SGA_v2.0_scaffold235G43663 Striga asiatica HOM05D009666 ORTHO05D000277 5.2e-14 81.6 123 33.3
CSS0036595 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 8.9e-14 80.9 127 33.1
Actinidia05901 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.5e-13 80.1 130 30.0
Actinidia38160 Actinidia chinensis HOM05D000034 ORTHO05D000277 2.6e-13 79.3 130 29.2
CSS0033072 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.6e-13 79.3 127 30.7
CSS0010302 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.4e-13 78.6 127 31.5
CSS0015669 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.4e-13 78.6 127 31.5
CSS0024362 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.4e-13 78.6 127 31.5
CSS0031455 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.4e-13 78.6 127 31.5
CSS0040966 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.4e-13 78.6 127 31.5
vmacro06986 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 4.4e-13 78.6 125 29.6
EL10Ac1g00820 Beta vulgaris HOM05D000034 ORTHO05D000277 5.7e-13 78.2 130 30.0
ECA234G1376 Erigeron canadensis HOM05D000034 ORTHO05D000277 5.7e-13 78.2 124 28.2
PGR102G2952 Punica granatum HOM05D000034 ORTHO05D000277 5.7e-13 78.2 122 31.1
CANSAT80G1436 Cannabis sativa HOM05D001651 ORTHO05D000277 7.5e-13 77.8 128 28.9
Rhsim05G0104200 Rhododendron simsii HOM05D000034 ORTHO05D000277 7.5e-13 77.8 125 28.8
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 7.5e-13 77.8 122 29.5
COL.COLO4_20957 Corchorus olitorius HOM05D000034 ORTHO05D000277 9.8e-13 77.4 131 28.2
RcHm_v2.0_Chr6g0284621 Rosa chinensis HOM05D000034 ORTHO05D000277 9.8e-13 77.4 122 31.1
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 9.8e-13 77.4 129 29.5
SGA_v2.0_scaffold123G33397 Striga asiatica HOM05D000034 ORTHO05D000277 1.7e-12 76.6 137 29.2
Lsat_1_v5_gn_7_34221 Lactuca sativa HOM05D000034 ORTHO05D000277 2.8e-12 75.9 127 31.5
CANSAT64G1414 Cannabis sativa HOM05D001651 ORTHO05D000277 3.7e-12 75.5 128 28.1
ECA246G1567 Erigeron canadensis HOM05D000034 ORTHO05D000277 3.7e-12 75.5 127 27.6
FAN19G1412 Fragaria x ananassa HOM05D002788 ORTHO05D025609 3.7e-12 75.5 123 31.7
vmacro20771 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.7e-12 75.5 124 29.8
Rhsim02G0174400 Rhododendron simsii HOM05D011115 ORTHO05D013345 4.9e-12 75.1 108 35.2
MELO3C032644.2 Cucumis melo HOM05D001651 ORTHO05D000277 6.3e-12 74.7 128 29.7
FAN24G2067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.3e-12 74.7 127 30.7
PGR044G2465 Punica granatum HOM05D000034 ORTHO05D000277 6.3e-12 74.7 128 27.3
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 6.3e-12 74.7 122 27.9
Actinidia03627 Actinidia chinensis HOM05D000034 ORTHO05D000277 8.3e-12 74.3 127 29.9
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 8.3e-12 74.3 127 29.9
CSS0042392 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 8.3e-12 74.3 127 29.1
RcHm_v2.0_Chr2g0106711 Rosa chinensis HOM05D000034 ORTHO05D025609 8.3e-12 74.3 121 29.8
CANSAT80G0212 Cannabis sativa HOM05D008011 ORTHO05D000277 1.1e-11 73.9 121 28.9
FAN28G0140 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.1e-11 73.9 120 28.3
FAN28G0483 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.1e-11 73.9 120 28.3
Atru.chr6.37 Acer truncatum HOM05D000034 ORTHO05D000037 1.4e-11 73.6 124 29.0
PSO541G2803 Papaver somniferum HOM05D000034 ORTHO05D000277 1.4e-11 73.6 121 28.1
vmacro08876 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.4e-11 73.6 127 30.7
MELO3C028082.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.8e-11 73.2 128 28.1
FvH4_7g00320 Fragaria vesca HOM05D000034 ORTHO05D000277 1.8e-11 73.2 127 29.9
PSO063G6367 Papaver somniferum HOM05D000034 ORTHO05D000277 2.4e-11 72.8 121 28.1
Thecc.05G132700 Theobroma cacao HOM05D001651 ORTHO05D000277 2.4e-11 72.8 127 26.8
CSS0016960 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 3.1e-11 72.4 124 30.6
MELO3C029869.2 Cucumis melo HOM05D001651 ORTHO05D000277 3.1e-11 72.4 123 28.5
Migut.K00607 Erythranthe guttata HOM05D000034 ORTHO05D000277 3.1e-11 72.4 127 27.6
Lsat_1_v5_gn_5_163260 Lactuca sativa HOM05D000034 ORTHO05D000277 3.1e-11 72.4 127 29.1
PSO675G2744 Papaver somniferum HOM05D000034 ORTHO05D000037 3.1e-11 72.4 118 30.5
PGR044G2444 Punica granatum HOM05D000034 ORTHO05D000277 3.1e-11 72.4 133 27.8
Dinv15457 Davidia involucrata HOM05D000603 ORTHO05D002962 4.1e-11 72.0 125 24.8
Lsat_1_v5_gn_6_26421 Lactuca sativa HOM05D000034 ORTHO05D000277 4.1e-11 72.0 126 31.0
PGR142G3888 Punica granatum HOM05D000034 ORTHO05D000277 4.1e-11 72.0 127 28.3
SGA_v2.0_scaffold27G11629 Striga asiatica HOM05D009707 ORTHO05D010215 4.1e-11 72.0 122 30.3
Atru.chr6.1585 Acer truncatum HOM05D000034 ORTHO05D000277 5.4e-11 71.6 125 26.4
CSS0008044 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.4e-11 71.6 124 30.6
PGR031G0918 Punica granatum HOM05D000034 ORTHO05D000277 5.4e-11 71.6 122 29.5
MELO3C035126.2 Cucumis melo HOM05D001651 ORTHO05D000277 7.0e-11 71.2 129 28.7
MELO3C033417.2 Cucumis melo HOM05D001651 ORTHO05D009716 9.2e-11 70.9 128 26.6
MELO3C035680.2 Cucumis melo HOM05D001651 ORTHO05D000277 9.2e-11 70.9 128 26.6
ECA236G3356 Erigeron canadensis HOM05D001106 ORTHO05D000910 9.2e-11 70.9 138 26.1
ECA240G4546 Erigeron canadensis HOM05D000034 ORTHO05D000277 9.2e-11 70.9 138 26.1
PSO017G1737 Papaver somniferum HOM05D000034 ORTHO05D000037 9.2e-11 70.9 121 27.3
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 1.2e-10 70.5 121 28.1
EL10Ac4g07654 Beta vulgaris HOM05D000034 ORTHO05D000277 1.2e-10 70.5 132 28.8
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 1.2e-10 70.5 124 29.0
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.2e-10 70.5 121 28.9
PSO210G6693 Papaver somniferum HOM05D000034 ORTHO05D000277 1.6e-10 70.1 121 26.4
CSS0033959 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.0e-10 69.7 104 36.5
SGA_v2.0_scaffold102G29874 Striga asiatica HOM05D009707 ORTHO05D000277 2.0e-10 69.7 126 29.4
vmacro17940 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.0e-10 69.7 127 30.7
Atru.chr12.1422 Acer truncatum HOM05D000034 ORTHO05D000037 2.7e-10 69.3 126 28.6
MELO3C028435.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.7e-10 69.3 129 28.7
FAN15G3570 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.5e-10 68.6 122 27.0
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.5e-10 68.6 122 27.0
Dinv02446 Davidia involucrata HOM05D000034 ORTHO05D000277 5.9e-10 68.2 127 29.1
ECA240G4698 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.9e-10 68.2 124 28.2
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 5.9e-10 68.2 105 29.5
PGR102G0395 Punica granatum HOM05D000034 ORTHO05D000277 5.9e-10 68.2 107 30.8
Rhsim12G0154600 Rhododendron simsii HOM05D000034 ORTHO05D000277 7.8e-10 67.8 124 26.6
MELO3C032022.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.0e-09 67.4 129 26.4
PGR031G0842 Punica granatum HOM05D000034 ORTHO05D000277 1.0e-09 67.4 116 31.0
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 1.7e-09 66.6 127 29.9
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 1.7e-09 66.6 127 29.9
ECA246G4240 Erigeron canadensis HOM05D000034 ORTHO05D000037 1.7e-09 66.6 124 28.2
FAN16G3514 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.3e-09 66.2 121 26.4
Sed0021191 Sechium edule HOM05D001651 ORTHO05D000277 2.3e-09 66.2 134 28.4
MELO3C032206.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.9e-09 65.9 128 26.6
FvH4_1g18411 Fragaria vesca HOM05D000034 ORTHO05D000277 2.9e-09 65.9 121 28.1
Gohir.A07G187500 Gossypium hirsutum HOM05D000034 ORTHO05D000277 3.8e-09 65.5 123 24.4
Rhsim10G0122700 Rhododendron simsii HOM05D000034 ORTHO05D000277 3.8e-09 65.5 109 29.4
MELO3C033738.2 Cucumis melo HOM05D001651 ORTHO05D000277 8.6e-09 64.3 94 30.9
CsaV3_1G043570 Cucumis sativus L. HOM05D000665 ORTHO05D000140 8.6e-09 64.3 72 31.9
DCAR_020933 Daucus carota HOM05D000665 ORTHO05D000140 8.6e-09 64.3 125 26.4
FAN25G0666 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.6e-09 64.3 121 28.1
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.6e-09 64.3 121 28.1
Rhsim04G0178800 Rhododendron simsii HOM05D000034 ORTHO05D000277 8.6e-09 64.3 124 26.6
EL10Ac3g06576 Beta vulgaris HOM05D000034 ORTHO05D000037 1.9e-08 63.2 120 25.8
MELO3C034777.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.9e-08 63.2 127 26.0
FvH4_2g07610 Fragaria vesca HOM05D000034 ORTHO05D000277 1.9e-08 63.2 121 25.6
PSO478G0310 Papaver somniferum HOM05D000034 ORTHO05D000277 1.9e-08 63.2 121 24.0
FvH4_3g15552 Fragaria vesca HOM05D000034 ORTHO05D000277 2.5e-08 62.8 113 30.1
Cpa.g.sc37.168 Carica papaya HOM05D000665 ORTHO05D000140 3.3e-08 62.4 126 23.8
Ciclev10028943m.g Citrus clementina HOM05D000665 ORTHO05D000140 3.3e-08 62.4 126 23.8
FvH4_7g11552 Fragaria vesca HOM05D000034 ORTHO05D000277 3.3e-08 62.4 113 30.1
CiPaw.05G079800 Carya illinoinensis HOM05D000665 ORTHO05D000140 4.3e-08 62.0 122 24.6
QL11p049281 Quercus lobata HOM05D000665 ORTHO05D000140 4.3e-08 62.0 126 23.8
MELO3C028011.2 Cucumis melo HOM05D001651 ORTHO05D000277 5.6e-08 61.6 126 25.4
FAN11G0226 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.6e-08 61.6 104 30.8
FvH4_3g30720 Fragaria vesca HOM05D000034 ORTHO05D000277 7.3e-08 61.2 121 25.6
MD15G1289200 Malus domestica HOM05D000034 ORTHO05D000277 7.3e-08 61.2 126 27.8
Potri.004G172900 Populus trichocarpa HOM05D000665 ORTHO05D000140 7.3e-08 61.2 126 23.8
PGR044G1696 Punica granatum HOM05D000034 ORTHO05D000277 9.5e-08 60.8 91 31.9
Actinidia17901 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.2e-07 60.5 96 27.1
MELO3C027743.2 Cucumis melo HOM05D001651 ORTHO05D009716 1.2e-07 60.5 91 30.8
Duzib132G1144 Durio zibethinus HOM05D000665 ORTHO05D000140 1.2e-07 60.5 122 24.6
FAN12G3067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.2e-07 60.5 126 27.0
Medtr3g075160 Medicago truncatula HOM05D000034 ORTHO05D000277 1.2e-07 60.5 122 24.6
Thecc.02G063400 Theobroma cacao HOM05D000665 ORTHO05D000140 1.2e-07 60.5 122 24.6
Manes.11G096000 Manihot esculenta HOM05D000665 ORTHO05D000140 1.6e-07 60.1 126 23.0
Haze_23291 Corylus avellana HOM05D000665 ORTHO05D000140 2.1e-07 59.7 69 33.3
MELO3C033877.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.1e-07 59.7 125 27.2
FAN13G2115 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.1e-07 59.7 109 30.3
EL10Ac8g20046 Beta vulgaris HOM05D000034 ORTHO05D000277 2.8e-07 59.3 131 27.5
Dinv04945 Davidia involucrata HOM05D000665 ORTHO05D000140 2.8e-07 59.3 126 23.0
CANSAT25G2307 Cannabis sativa HOM05D000665 ORTHO05D000140 3.6e-07 58.9 122 23.0
Gohir.D01G157200 Gossypium hirsutum HOM05D000665 ORTHO05D000140 3.6e-07 58.9 122 23.8
Gorai.002G195300 Gossypium raimondii HOM05D000665 ORTHO05D000140 3.6e-07 58.9 122 23.8
Sed0003980 Sechium edule HOM05D000665 ORTHO05D000140 3.6e-07 58.9 121 24.8
CDE07G0780 Ceratophyllum demersum HOM05D000665 ORTHO05D000140 4.7e-07 58.5 94 28.7
Gohir.A01G166000 Gossypium hirsutum HOM05D000665 ORTHO05D000140 4.7e-07 58.5 122 23.8
GSVIVG01024053001 Vitis vinifera HOM05D000665 ORTHO05D000140 4.7e-07 58.5 126 23.0
FvH4_2g09412 Fragaria vesca HOM05D000034 ORTHO05D000277 6.1e-07 58.2 113 28.3
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 6.1e-07 58.2 121 24.8
MELO3C032795.2 Cucumis melo HOM05D001651 ORTHO05D000277 8.0e-07 57.8 126 26.2
Actinidia33028 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.0e-06 57.4 101 25.7
CDE04G0179 Ceratophyllum demersum HOM05D000665 ORTHO05D000140 1.0e-06 57.4 94 27.7
Haze_23288 Corylus avellana HOM05D000665 ORTHO05D000140 1.0e-06 57.4 69 31.9
MELO3C033199.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.4e-06 57.0 106 28.3
PSO063G0159 Papaver somniferum HOM05D000665 ORTHO05D000140 1.4e-06 57.0 63 36.5
QL01p016365 Quercus lobata HOM05D000665 ORTHO05D000140 1.4e-06 57.0 69 33.3
MSTRG.18129 Avicennia marina HOM05D000665 ORTHO05D000140 1.8e-06 56.6 69 36.2
Dinv15837 Davidia involucrata HOM05D000665 ORTHO05D000140 1.8e-06 56.6 82 29.3
Sed0027236 Sechium edule HOM05D000665 ORTHO05D000140 1.8e-06 56.6 51 43.1
TAR526G0001 Trochodendron aralioides HOM05D000665 ORTHO05D000140 1.8e-06 56.6 70 31.4
Sed0017352 Sechium edule HOM05D001651 ORTHO05D000277 2.3e-06 56.2 116 25.0
Atru.chr2.1391 Acer truncatum HOM05D000034 ORTHO05D000277 4.0e-06 55.5 103 24.3
CSS0026213 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.0e-06 55.5 91 28.6
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 4.0e-06 55.5 74 28.4
Thecc.09G253400 Theobroma cacao HOM05D000665 ORTHO05D000140 4.0e-06 55.5 74 31.1
CiPaw.15G145500 Carya illinoinensis HOM05D000665 ORTHO05D000140 5.2e-06 55.1 132 27.3
COL.COLO4_17303 Corchorus olitorius HOM05D000665 ORTHO05D000140 5.2e-06 55.1 122 23.0
Lj4C833G3 Lonicera japonica HOM05D000665 ORTHO05D000140 5.2e-06 55.1 69 30.4
TPR.G11842 Trifolium pratense HOM05D000001 ORTHO05D000003 5.2e-06 55.1 64 29.7
CSS0048757 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.8e-06 54.7 104 29.8
MELO3C013181.2 Cucumis melo HOM05D001651 ORTHO05D000277 6.8e-06 54.7 96 30.2
MELO3C035327.2 Cucumis melo HOM05D001651 ORTHO05D000277 6.8e-06 54.7 110 26.4
Eucgr.H01077 Eucalyptus grandis HOM05D000665 ORTHO05D000140 6.8e-06 54.7 69 34.8
Hma1.2p1_0979F.1_g243550 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 6.8e-06 54.7 74 31.1
Haze_20106 Corylus avellana HOM05D000665 ORTHO05D000140 8.9e-06 54.3 126 26.2
Lsat_1_v5_gn_7_30480 Lactuca sativa HOM05D000034 ORTHO05D000277 8.9e-06 54.3 98 28.6
Psat2g130400 Pisum sativum HOM05D000665 ORTHO05D000140 8.9e-06 54.3 55 34.5


User provided reference genes

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