Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.7e-196 689.1 335 100.0
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 7.6e-181 637.1 335 92.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.9e-169 598.2 335 86.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.0e-161 572.0 335 81.2
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.0e-161 572.0 335 81.2
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 9.6e-160 567.0 332 81.9
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.1e-155 553.5 335 82.1
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 1.4e-155 553.1 335 77.9
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.0e-154 547.7 334 78.4
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.0e-153 547.0 328 79.9
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.3e-153 545.8 335 77.6
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 3.0e-153 545.4 335 77.3
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.5e-152 542.3 334 77.5
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 4.3e-152 541.6 334 77.8
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 7.4e-152 540.8 333 77.5
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.6e-151 539.7 335 75.8
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.4e-150 536.6 334 76.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.1e-150 535.4 335 75.8
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 5.3e-150 534.6 335 76.1
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.9e-150 534.3 334 76.0
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 9.0e-150 533.9 334 76.9
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.5e-149 533.1 334 75.7
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.5e-149 533.1 334 74.6
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 2.0e-149 532.7 331 76.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.5e-149 531.6 335 75.5
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.8e-149 531.2 335 75.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.0e-148 530.4 335 75.5
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-148 530.0 334 75.7
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.7e-148 529.6 335 74.0
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 4.9e-148 528.1 334 73.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.5e-148 527.7 335 75.2
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.4e-147 526.6 335 75.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 4.2e-147 525.0 335 74.0
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 9.3e-147 523.9 335 73.7
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 2.1e-146 522.7 328 76.2
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 4.6e-146 521.5 334 75.4
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.0e-145 520.4 335 74.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.0e-145 520.4 336 73.8
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.3e-145 520.0 334 72.8
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.8e-145 519.6 337 75.4
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.8e-145 519.6 331 73.7
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 2.3e-145 519.2 331 74.0
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.3e-145 519.2 335 75.8
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.3e-145 519.2 335 74.9
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.1e-145 518.1 335 74.0
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 6.7e-145 517.7 337 73.9
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 8.7e-145 517.3 335 73.7
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 4.3e-144 515.0 335 74.0
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 4.3e-144 515.0 334 71.9
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 7.4e-144 514.2 331 73.1
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.3e-143 513.5 331 73.1
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 2.1e-143 512.7 335 71.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 3.7e-143 511.9 331 74.3
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 6.3e-143 511.1 331 74.3
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 6.3e-143 511.1 335 73.1
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.2e-143 510.8 335 73.1
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.4e-142 510.0 334 73.1
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 3.1e-142 508.8 335 73.4
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 6.9e-142 507.7 334 71.6
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.2e-141 506.9 331 72.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.5e-141 506.5 327 73.4
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.0e-141 506.1 335 71.6
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 3.4e-141 505.4 333 73.0
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.4e-141 505.4 335 72.8
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 4.5e-141 505.0 335 71.3
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 7.6e-141 504.2 332 73.2
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 7.6e-141 504.2 329 73.9
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.9e-140 502.3 335 72.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.9e-140 502.3 335 72.5
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.5e-140 500.7 333 73.0
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.9e-139 499.6 336 71.4
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.5e-139 499.2 331 71.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.5e-139 499.2 328 72.3
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 7.9e-138 494.2 328 72.6
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 3.0e-137 492.3 323 72.8
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 5.1e-137 491.5 330 70.3
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.1e-136 490.3 328 70.4
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.5e-136 490.0 328 70.7
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 1.6e-135 486.5 339 69.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 3.7e-135 485.3 333 70.6
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.1e-134 482.3 334 69.5
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 4.1e-134 481.9 335 70.1
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 5.3e-134 481.5 334 70.1
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.0e-133 479.6 333 68.5
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.0e-133 479.6 336 69.9
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 5.9e-133 478.0 334 68.6
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.8e-132 475.3 331 68.6
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 8.5e-132 474.2 332 70.2
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.2e-130 470.3 326 68.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.1e-130 469.5 342 67.5
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 4.6e-130 468.4 310 72.3
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 6.1e-130 468.0 329 70.2
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.0e-129 467.2 334 67.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.3e-129 466.1 334 68.6
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.3e-128 462.2 329 67.5
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 9.7e-128 460.7 328 69.5
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.2e-127 459.5 330 65.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 2.0e-125 453.0 327 66.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 3.4e-125 452.2 334 65.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 1.7e-124 449.9 334 64.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.8e-124 448.7 334 63.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 5.2e-121 438.3 327 64.5
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 6.7e-121 438.0 334 63.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 4.8e-119 431.8 321 67.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 8.2e-119 431.0 327 62.4
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-118 430.6 327 62.1
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 4.1e-118 428.7 333 61.9
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.6e-117 426.8 311 67.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 3.8e-116 422.2 289 71.3
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.5e-115 420.2 328 61.6
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 5.5e-115 418.3 289 69.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.6e-114 416.8 329 60.5
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 3.0e-113 412.5 379 55.9
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 5.2e-113 411.8 261 77.8
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-112 410.6 329 60.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.0e-112 409.8 330 62.4
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 4.4e-112 408.7 331 60.4
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 3.7e-111 405.6 303 63.4
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.5e-104 383.6 251 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.5e-91 339.7 380 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 7.3e-91 338.2 341 51.0
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.2e-86 322.8 207 76.8
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.2e-85 320.9 345 53.0
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 3.5e-85 319.3 217 73.3
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.3e-84 317.4 332 52.1
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 5.0e-84 315.5 305 54.8
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 7.3e-83 311.6 276 56.2
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 3.1e-81 306.2 407 42.5
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 2.4e-78 296.6 338 47.9
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.1e-73 281.2 278 52.9
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.6e-72 276.6 250 57.2
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.3e-68 264.2 187 65.2
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.1e-57 228.0 185 57.3
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 6.4e-55 218.8 218 50.9
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 6.4e-55 218.8 153 66.7
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 2.1e-53 213.8 367 35.7
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.7e-47 194.1 327 38.5
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 8.4e-47 191.8 249 42.6
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.1e-46 191.4 143 61.5
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.6e-45 187.6 155 60.0
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.1e-45 187.2 134 68.7
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 4.0e-41 172.9 137 61.3
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 4.0e-41 172.9 137 61.3
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 5.3e-33 146.0 109 68.8
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 3.4e-32 143.3 89 76.4
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.5e-29 133.3 90 65.6
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 3.7e-26 123.2 152 46.1
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.6e-21 107.8 406 24.6
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.7e-18 97.8 67 65.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-16 90.1 67 62.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.7e-15 87.8 76 52.6
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.7e-11 72.8 38 84.2
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 8.2e-10 68.9 59 55.9
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.0e-08 64.3 71 45.1
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.6e-08 63.9 51 66.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 1.4e-06 58.2 32 75.0


User provided reference genes

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