Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 1.2e-58 229.6 114 100.0
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 5.7e-56 220.7 114 95.6
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 4.9e-47 191.0 117 82.9
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 8.3e-47 190.3 117 82.1
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 6.0e-45 184.1 115 80.9
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 4.7e-42 174.5 116 75.9
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 8.9e-41 170.2 109 77.1
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 1.5e-40 169.5 108 76.9
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 2.0e-40 169.1 113 72.6
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 2.0e-40 169.1 107 77.6
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 7.5e-40 167.2 109 76.1
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 1.3e-39 166.4 116 74.1
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 1.7e-39 166.0 111 73.9
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 3.7e-39 164.9 105 72.4
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 4.9e-39 164.5 101 78.2
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 6.4e-39 164.1 111 73.9
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 8.3e-39 163.7 116 71.6
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 1.1e-38 163.3 111 72.1
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 1.9e-38 162.5 100 76.0
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 1.9e-38 162.5 99 76.8
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 2.4e-38 162.2 114 70.2
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 4.1e-38 161.4 97 78.4
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 4.1e-38 161.4 116 71.6
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 5.4e-38 161.0 106 72.6
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 7.1e-38 160.6 96 77.1
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 9.2e-38 160.2 106 72.6
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 9.2e-38 160.2 106 72.6
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 9.2e-38 160.2 115 67.8
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 1.2e-37 159.8 110 67.3
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 1.2e-37 159.8 103 72.8
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 1.2e-37 159.8 112 70.5
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 1.6e-37 159.5 114 68.4
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 1.6e-37 159.5 115 67.8
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 1.6e-37 159.5 114 68.4
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 1.6e-37 159.5 114 68.4
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 1.6e-37 159.5 114 70.2
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 2.1e-37 159.1 98 75.5
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 2.1e-37 159.1 99 75.8
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 2.1e-37 159.1 99 75.8
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 2.1e-37 159.1 111 69.4
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 2.7e-37 158.7 109 70.6
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 3.5e-37 158.3 92 79.3
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 4.6e-37 157.9 111 69.4
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 6.0e-37 157.5 99 73.7
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 7.8e-37 157.1 115 67.8
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 7.8e-37 157.1 111 69.4
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 7.8e-37 157.1 111 69.4
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 7.8e-37 157.1 111 70.3
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 7.8e-37 157.1 109 69.7
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 7.8e-37 157.1 107 71.0
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 7.8e-37 157.1 111 69.4
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 1.0e-36 156.8 114 66.7
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 1.0e-36 156.8 90 80.0
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 1.0e-36 156.8 113 71.7
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 1.0e-36 156.8 113 69.0
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.3e-36 156.4 107 70.1
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 1.3e-36 156.4 111 71.2
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 1.3e-36 156.4 113 70.8
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 1.3e-36 156.4 92 81.5
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 1.3e-36 156.4 111 71.2
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.7e-36 156.0 105 71.4
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 2.3e-36 155.6 113 70.8
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 3.9e-36 154.8 118 65.3
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 5.1e-36 154.5 109 70.6
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 6.6e-36 154.1 112 68.8
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 6.6e-36 154.1 120 66.7
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 8.6e-36 153.7 91 79.1
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 1.1e-35 153.3 111 70.3
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 1.5e-35 152.9 117 63.2
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 1.9e-35 152.5 118 66.9
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 1.9e-35 152.5 115 66.1
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 2.5e-35 152.1 93 76.3
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 2.5e-35 152.1 94 72.3
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 7.3e-35 150.6 122 66.4
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 7.3e-35 150.6 89 78.7
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 9.5e-35 150.2 115 65.2
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 1.2e-34 149.8 104 68.3
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 2.1e-34 149.1 94 72.3
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 2.1e-34 149.1 76 90.8
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 2.8e-34 148.7 113 67.3
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 6.2e-34 147.5 96 72.9
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 8.1e-34 147.1 95 71.6
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.3e-33 145.6 122 63.9
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 4.0e-33 144.8 77 87.0
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 4.0e-33 144.8 114 62.3
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 7.6e-32 140.6 106 67.0
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 2.9e-31 138.7 114 62.3
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 3.8e-31 138.3 92 70.7
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 3.8e-31 138.3 76 82.9
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 6.4e-31 137.5 76 81.6
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 1.4e-30 136.3 90 70.0
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 7.1e-30 134.0 76 82.9
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 1.2e-29 133.3 93 65.6
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 7.8e-29 130.6 78 76.9
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 1.3e-28 129.8 79 75.9
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 3.0e-28 128.6 105 62.9
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.9e-27 125.9 106 65.1
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 2.5e-27 125.6 91 69.2
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 4.0e-25 118.2 100 65.0
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 8.4e-23 110.5 114 46.5
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 1.4e-22 109.8 98 57.1
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 4.6e-21 104.8 119 47.1
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 1.9e-19 99.4 97 51.5
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 4.8e-18 94.7 55 80.0
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 4.0e-17 91.7 76 55.3
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 1.4e-14 83.2 112 41.1
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 3.1e-09 65.5 96 39.6


User provided reference genes

Program Settings