Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 3.9e-105 384.8 194 100.0
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.1e-67 260.4 190 71.1
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 7.5e-56 221.1 181 66.9
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 1.3e-55 220.3 186 62.4
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.6e-53 213.4 190 62.1
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.0e-52 210.7 181 63.5
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.9e-52 209.1 187 64.2
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.6e-52 208.0 187 63.1
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.1e-50 203.0 179 60.9
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.1e-50 203.0 190 60.0
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.4e-49 200.3 184 60.3
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 2.6e-48 196.1 179 59.8
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 9.8e-48 194.1 185 60.5
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 2.9e-47 192.6 190 56.8
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.4e-46 189.5 186 57.5
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 3.2e-46 189.1 174 59.2
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 7.0e-46 188.0 178 60.1
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 9.2e-46 187.6 181 59.1
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 3.5e-45 185.7 185 56.2
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 7.8e-45 184.5 182 59.3
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.3e-44 183.0 178 57.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 3.0e-44 182.6 180 58.3
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.0e-44 182.6 179 53.6
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 3.0e-44 182.6 179 53.6
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 6.6e-44 181.4 186 54.3
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 6.6e-44 181.4 174 59.2
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 6.6e-44 181.4 178 57.3
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 8.6e-44 181.0 195 50.8
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 8.6e-44 181.0 180 55.6
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 1.9e-43 179.9 181 58.0
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.9e-43 179.9 181 58.0
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.6e-43 178.3 181 58.0
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.5e-43 177.6 181 57.5
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.2e-42 177.2 174 56.3
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.6e-42 176.8 175 57.1
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 2.1e-42 176.4 179 54.7
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 2.8e-42 176.0 174 56.9
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 3.6e-42 175.6 174 58.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 6.2e-42 174.9 178 55.6
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.0e-41 174.1 174 56.9
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.0e-41 174.1 174 54.0
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.4e-41 173.7 175 56.0
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.3e-41 172.9 174 54.0
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 3.1e-41 172.6 185 54.6
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 4.0e-41 172.2 179 52.5
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 6.8e-41 171.4 176 53.4
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 8.9e-41 171.0 185 50.8
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 8.9e-41 171.0 185 54.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.2e-40 170.6 190 51.1
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.5e-40 170.2 186 53.2
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 3.4e-40 169.1 175 56.0
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.4e-40 169.1 187 50.3
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 4.4e-40 168.7 174 52.9
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 5.8e-40 168.3 185 54.1
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 9.8e-40 167.5 183 54.6
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 2.9e-39 166.0 187 50.8
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 2.9e-39 166.0 176 54.0
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 2.9e-39 166.0 200 48.5
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 3.7e-39 165.6 186 51.6
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.7e-39 165.6 193 52.3
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 4.9e-39 165.2 176 54.5
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 4.9e-39 165.2 187 54.0
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 6.4e-39 164.9 187 52.9
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 8.3e-39 164.5 186 50.5
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 8.3e-39 164.5 185 54.1
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 1.1e-38 164.1 177 53.7
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.9e-38 163.3 176 51.7
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 3.2e-38 162.5 197 48.7
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.1e-38 162.2 180 52.8
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.4e-38 161.8 180 50.6
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 5.4e-38 161.8 187 51.3
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 9.2e-38 161.0 185 53.0
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 9.2e-38 161.0 179 51.4
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.2e-37 160.6 186 51.6
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.6e-37 160.2 174 52.9
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 3.5e-37 159.1 178 53.4
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 3.5e-37 159.1 186 50.5
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 4.6e-37 158.7 185 49.2
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 6.0e-37 158.3 180 52.8
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.3e-36 156.4 187 50.3
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 8.6e-36 154.5 179 51.4
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 1.5e-35 153.7 179 51.4
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 4.3e-35 152.1 182 52.7
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 6.2e-34 148.3 180 52.8
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.1e-33 147.5 188 46.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.4e-33 147.1 187 47.1
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 1.8e-33 146.7 181 49.2
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.2e-32 144.1 178 47.8
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.5e-32 143.7 180 48.3
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 2.0e-32 143.3 187 46.0
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 5.8e-32 141.7 184 50.0
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 9.8e-32 141.0 174 51.1
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.7e-31 139.0 183 46.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 6.4e-31 138.3 187 43.3
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 5.4e-30 135.2 178 47.8
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.1e-30 134.8 190 43.7
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.7e-29 132.9 174 45.4
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.6e-29 132.1 181 43.1
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.0e-28 131.0 140 50.7
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.0e-28 131.0 123 60.2
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.3e-28 129.8 174 43.1
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.9e-28 129.0 203 41.9
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.2e-26 124.0 191 41.9
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.1e-26 123.2 176 42.0
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 2.8e-26 122.9 124 51.6
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.8e-26 122.9 178 41.6
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 8.1e-26 121.3 175 44.0
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 8.1e-26 121.3 175 44.0
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 8.1e-26 121.3 182 43.4
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.4e-25 120.6 181 42.0
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-25 120.6 175 43.4
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.4e-25 120.6 175 43.4
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.8e-25 120.2 188 40.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.3e-25 119.8 175 43.4
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 2.3e-25 119.8 179 40.8
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 3.1e-25 119.4 175 43.4
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 8.9e-25 117.9 176 40.9
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 8.9e-25 117.9 194 39.7
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.2e-24 117.5 180 42.2
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 4.4e-24 115.5 176 40.3
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 5.8e-24 115.2 130 52.3
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 9.9e-24 114.4 180 41.1
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 2.9e-23 112.8 179 40.8
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 3.8e-23 112.5 179 39.7
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 3.8e-23 112.5 179 39.7
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 8.4e-23 111.3 180 40.0
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.1e-22 110.9 177 40.1
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 9.2e-22 107.8 182 39.6
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 9.2e-22 107.8 108 59.3
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 2.7e-21 106.3 179 38.0
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.7e-20 103.6 180 37.8
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 3.3e-19 99.4 119 47.1
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.6e-18 97.1 102 54.9
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 8.1e-18 94.7 102 55.9
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 1.4e-17 94.0 191 34.6
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 6.9e-17 91.7 155 38.7
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 1.5e-16 90.5 187 34.2
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 3.4e-16 89.4 121 46.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 4.9e-15 85.5 203 33.0
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.6e-10 70.5 175 34.3
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-09 67.8 175 33.7
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 3.1e-09 66.2 72 52.8


User provided reference genes

Program Settings