Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0112300 Rhododendron simsii HOM05D004622 ORTHO05D005431 9.5e-121 436.8 213 100.0
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 1.2e-46 190.7 201 56.7
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 2.0e-41 173.3 214 52.8
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 2.4e-39 166.4 222 50.5
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.2e-38 164.1 203 53.2
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 1.6e-38 163.7 197 54.3
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 4.5e-38 162.2 224 50.4
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.3e-37 160.6 222 50.0
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 2.2e-37 159.8 208 51.9
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 2.9e-37 159.5 226 50.0
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.1e-36 157.5 197 51.8
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.9e-36 156.8 218 49.1
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 1.2e-35 154.1 205 51.2
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 1.2e-35 154.1 216 49.1
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 8.0e-35 151.4 187 51.9
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.0e-34 151.0 215 49.8
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 3.4e-33 146.0 230 47.4
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 5.7e-33 145.2 196 49.5
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 5.7e-33 145.2 224 45.5
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 7.5e-33 144.8 230 45.2
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 9.8e-33 144.4 228 45.6
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 1.7e-32 143.7 224 45.5
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.7e-32 143.7 231 46.8
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 2.8e-32 142.9 202 47.5
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 4.9e-32 142.1 224 45.5
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 6.3e-32 141.7 187 50.8
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.1e-31 139.4 195 48.7
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.1e-31 139.4 195 48.7
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 5.4e-31 138.7 230 46.1
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 7.0e-31 138.3 229 45.4
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.2e-30 137.5 219 46.6
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 1.2e-30 137.5 212 44.3
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 1.6e-30 137.1 232 43.5
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 1.6e-30 137.1 187 47.1
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 2.7e-30 136.3 201 49.8
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 3.5e-30 136.0 209 45.0
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 4.5e-30 135.6 244 44.3
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 7.7e-30 134.8 222 46.4
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 7.7e-30 134.8 222 46.4
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 1.0e-29 134.4 225 44.0
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 1.7e-29 133.7 225 44.0
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.7e-29 133.7 195 45.1
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 1.7e-29 133.7 187 47.1
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 2.3e-29 133.3 234 43.2
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 3.8e-29 132.5 194 46.9
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 3.8e-29 132.5 229 41.9
FAN25G2155 Fragaria x ananassa HOM05D004622 ORTHO05D005431 5.0e-29 132.1 225 43.6
FAN21G1025 Fragaria x ananassa HOM05D004622 ORTHO05D005431 6.6e-29 131.7 225 43.6
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 6.6e-29 131.7 241 42.3
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 1.5e-28 130.6 200 44.5
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.9e-28 130.2 226 43.4
Actinidia24220 Actinidia chinensis HOM05D004622 ORTHO05D005431 2.5e-28 129.8 168 52.4
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 3.3e-28 129.4 224 42.9
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 4.3e-28 129.0 218 45.0
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 5.6e-28 128.6 234 42.3
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 7.3e-28 128.3 211 45.5
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 2.1e-27 126.7 208 43.8
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.1e-27 126.7 246 39.4
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.1e-27 125.2 215 43.3
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 8.0e-27 124.8 249 38.6
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 1.0e-26 124.4 226 41.6
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 1.4e-26 124.0 225 42.7
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 2.3e-26 123.2 245 39.6
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 2.0e-25 120.2 196 44.4
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 2.0e-25 120.2 192 45.8
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 2.0e-25 120.2 233 38.6
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 9.8e-25 117.9 200 45.0
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.3e-24 117.5 218 42.2
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 2.2e-24 116.7 245 36.7
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.1e-23 114.4 195 41.5
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 1.4e-23 114.0 199 42.7
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.4e-23 114.0 254 39.4
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 4.1e-23 112.5 216 41.2
AUR62009747 Chenopodium quinoa HOM05D004622 ORTHO05D005431 1.6e-22 110.5 242 38.4
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 2.7e-22 109.8 258 35.3
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 5.9e-22 108.6 233 37.8
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 5.9e-22 108.6 192 40.6
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 5.9e-22 108.6 220 37.7
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 5.9e-22 108.6 196 42.9
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 7.8e-22 108.2 196 42.3
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 7.8e-22 108.2 194 39.7
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 1.7e-21 107.1 258 34.5
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 2.3e-21 106.7 191 42.9
AUR62036198 Chenopodium quinoa HOM05D004622 ORTHO05D005431 3.9e-21 105.9 224 39.3
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 6.6e-21 105.1 225 36.9
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 6.6e-21 105.1 254 35.4
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 8.6e-21 104.8 191 39.3
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.9e-20 103.6 251 34.7
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.9e-20 103.6 255 34.1
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 4.3e-20 102.4 239 36.0
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 1.2e-19 100.9 237 35.9
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 1.2e-19 100.9 194 38.7
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 1.6e-19 100.5 264 34.5
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 1.6e-19 100.5 198 39.4
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 4.7e-19 99.0 170 45.3
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.1e-18 96.3 223 37.7
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 3.1e-18 96.3 211 37.9
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 5.2e-18 95.5 217 35.9
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 2.0e-17 93.6 210 37.6
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 3.4e-17 92.8 193 39.9
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 4.4e-17 92.4 226 36.3
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 9.8e-17 91.3 205 42.4
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 1.3e-16 90.9 112 50.0
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 8.3e-16 88.2 188 36.7
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.1e-15 87.8 269 32.7
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.4e-15 87.4 191 37.7
SalBow6G1431 Salvia bowleyana HOM05D004622 ORTHO05D005431 3.2e-15 86.3 124 45.2
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 2.0e-14 83.6 239 32.2
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.3e-13 80.9 90 50.0
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.7e-13 80.5 201 34.8
THA.LOC104799551 Tarenaya hassleriana HOM05D004622 ORTHO05D005431 2.3e-13 80.1 181 38.7
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.0e-13 79.7 191 35.6
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.0e-13 79.0 239 32.2
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.0e-13 79.0 239 33.1
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 6.6e-13 78.6 92 48.9
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 3.3e-12 76.3 116 43.1
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 4.3e-12 75.9 191 36.6
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.2e-11 74.3 223 32.3
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 3.6e-11 72.8 96 46.9
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 5.2e-10 68.9 103 48.5
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 9.8e-09 64.7 181 35.9
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 1.7e-08 63.9 90 41.1
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 1.1e-07 61.2 197 29.9
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 9.2e-07 58.2 104 37.5
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 1.2e-06 57.8 196 35.2
CARHR191140 Cardamine hirsuta HOM05D004622 ORTHO05D005431 3.5e-06 56.2 197 31.0


User provided reference genes

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