Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.4e-119 432.2 219 100.0
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.0e-16 91.3 57 84.2
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.7e-16 90.5 50 92.0
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 2.9e-16 89.7 50 92.0
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 5.0e-16 89.0 50 92.0
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 8.5e-16 88.2 81 61.7
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 8.5e-16 88.2 50 90.0
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.9e-15 87.0 81 60.5
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 3.2e-15 86.3 50 88.0
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 4.2e-15 85.9 50 88.0
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 5.5e-15 85.5 49 85.7
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 5.5e-15 85.5 49 85.7
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 7.2e-15 85.1 50 86.0
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 7.2e-15 85.1 87 56.3
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 1.2e-14 84.3 50 86.0
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.1e-14 83.6 50 86.0
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 2.8e-14 83.2 57 75.4
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.8e-14 83.2 48 87.5
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 3.6e-14 82.8 50 84.0
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 3.6e-14 82.8 48 83.3
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 6.1e-14 82.0 81 55.6
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 8.0e-14 81.6 49 83.7
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 8.0e-14 81.6 50 80.0
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 8.0e-14 81.6 50 78.0
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 8.0e-14 81.6 46 89.1
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 8.0e-14 81.6 46 89.1
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 8.0e-14 81.6 50 82.0
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 1.4e-13 80.9 81 55.6
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 1.4e-13 80.9 50 82.0
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 2.3e-13 80.1 50 78.0
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.0e-13 79.7 50 80.0
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 3.0e-13 79.7 49 79.6
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 6.8e-13 78.6 81 53.1
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 6.8e-13 78.6 81 53.1
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 8.8e-13 78.2 50 76.0
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 8.8e-13 78.2 49 75.5
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 1.2e-12 77.8 51 72.5
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 1.5e-12 77.4 50 78.0
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 2.6e-12 76.6 50 78.0
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 3.4e-12 76.3 50 78.0
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 3.4e-12 76.3 50 76.0
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 4.4e-12 75.9 50 74.0
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 4.4e-12 75.9 50 74.0
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 4.4e-12 75.9 50 74.0
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 4.4e-12 75.9 47 76.6
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 5.7e-12 75.5 81 50.6
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 7.5e-12 75.1 79 51.9
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 7.5e-12 75.1 50 72.0
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 7.5e-12 75.1 48 75.0
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 7.5e-12 75.1 49 75.5
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 7.5e-12 75.1 49 75.5
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 7.5e-12 75.1 50 76.0
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 9.8e-12 74.7 49 75.5
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.3e-11 74.3 79 53.2
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 1.7e-11 73.9 50 70.0
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.7e-11 73.9 50 74.0
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.7e-11 73.9 50 74.0
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 2.2e-11 73.6 60 63.3
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 2.8e-11 73.2 45 80.0
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 4.9e-11 72.4 60 63.3
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 4.9e-11 72.4 44 79.5
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 6.3e-11 72.0 44 75.0
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 6.3e-11 72.0 44 79.5
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 6.3e-11 72.0 44 79.5
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 1.8e-10 70.5 47 66.0
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 2.4e-10 70.1 45 71.1
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 3.1e-10 69.7 46 69.6
Rhsim03G0238300 Rhododendron simsii HOM05D016688 ORTHO05D026092 7.0e-10 68.6 64 56.2
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 9.2e-10 68.2 41 82.9
Rhsim11G0150200 Rhododendron simsii HOM05D000308 ORTHO05D026092 1.2e-09 67.8 85 45.9
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.6e-09 67.4 49 69.4
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.6e-09 67.4 49 69.4
Rhsim10G0210500 Rhododendron simsii HOM05D016688 ORTHO05D026092 1.6e-09 67.4 64 54.7
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.0e-09 67.0 48 64.6
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.0e-09 67.0 48 66.7
Rhsim06G0201800 Rhododendron simsii HOM05D016688 ORTHO05D026092 2.7e-09 66.6 64 54.7
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 3.5e-09 66.2 51 66.7
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 3.5e-09 66.2 45 75.6
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 4.5e-09 65.9 45 68.9
Rhsim12G0007300 Rhododendron simsii HOM05D016688 ORTHO05D338867 4.5e-09 65.9 63 55.6
RhsimUnG0171900 Rhododendron simsii HOM05D016688 ORTHO05D026092 4.5e-09 65.9 63 55.6
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 4.5e-09 65.9 55 60.0
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 5.9e-09 65.5 45 68.9
Rhsim02G0186300 Rhododendron simsii HOM05D016688 ORTHO05D338690 5.9e-09 65.5 64 53.1
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 7.8e-09 65.1 45 68.9
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 1.3e-08 64.3 56 58.9
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 1.3e-08 64.3 40 75.0
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 1.7e-08 63.9 54 61.1
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.7e-08 63.9 54 59.3
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 5.0e-08 62.4 46 67.4
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 6.6e-08 62.0 45 64.4
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 8.6e-08 61.6 49 63.3
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.5e-07 60.8 46 58.7
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 2.5e-07 60.1 45 62.2
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 2.5e-07 60.1 45 60.0
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 2.5e-07 60.1 45 60.0
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 5.6e-07 58.9 45 62.2
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 7.3e-07 58.5 108 34.3
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 7.3e-07 58.5 108 34.3
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 7.3e-07 58.5 41 70.7
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 7.3e-07 58.5 45 60.0
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 9.5e-07 58.2 45 57.8
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 9.5e-07 58.2 45 57.8
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 2.8e-06 56.6 45 55.6
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 2.8e-06 56.6 42 64.3
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.6e-06 56.2 42 64.3
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.6e-06 56.2 42 64.3
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 4.7e-06 55.8 45 62.2
Rhsim03G0026200 Rhododendron simsii HOM05D016688 ORTHO05D339286 4.7e-06 55.8 46 60.9
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 6.1e-06 55.5 45 53.3
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 6.1e-06 55.5 45 53.3
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 8.0e-06 55.1 45 53.3
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 8.0e-06 55.1 45 51.1


User provided reference genes

Program Settings