Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 0.0e+00 1099.7 578 100.0
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.8e-229 797.0 583 72.2
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 5.6e-216 754.6 580 68.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 5.8e-213 744.6 580 66.9
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.9e-212 742.3 578 66.4
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.9e-212 742.3 581 67.0
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.4e-211 740.0 581 66.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 7.1e-211 737.6 579 68.4
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 7.8e-210 734.2 583 67.2
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 3.9e-209 731.9 584 65.1
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 5.1e-209 731.5 580 66.2
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 5.1e-209 731.5 580 66.0
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 5.6e-208 728.0 578 66.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 7.3e-208 727.6 584 63.2
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 9.6e-208 727.2 581 65.6
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-207 726.9 582 64.9
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-203 713.4 577 63.1
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-202 710.3 581 62.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.1e-202 709.5 580 63.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.7e-202 709.1 581 63.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.9e-201 705.3 584 62.7
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 4.3e-200 701.8 574 62.7
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.6e-199 699.9 581 62.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.5e-197 693.3 580 62.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.4e-197 692.2 586 61.9
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.4e-197 692.2 586 61.9
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 5.8e-197 691.4 591 61.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.6e-197 691.0 582 63.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-196 689.9 576 61.6
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.9e-196 689.1 579 63.0
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.9e-196 688.3 578 60.7
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-196 688.0 576 61.6
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.9e-195 686.4 577 63.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.2e-195 685.6 585 62.2
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.2e-195 685.3 585 60.5
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 4.2e-195 685.3 579 61.7
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 4.2e-195 685.3 583 61.6
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.6e-194 681.8 585 60.9
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.9e-194 681.0 580 60.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.3e-193 679.5 580 63.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 3.0e-193 679.1 578 60.7
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.1e-192 677.2 589 60.3
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.5e-192 676.8 449 75.5
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.9e-192 676.4 584 61.5
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 4.3e-192 675.2 584 62.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.6e-192 674.9 516 67.1
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.3e-191 673.7 582 62.7
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.8e-191 672.5 581 59.2
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-190 670.2 560 63.2
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.4e-190 669.5 581 61.6
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 3.1e-190 669.1 581 63.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 3.1e-190 669.1 587 61.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 5.3e-190 668.3 579 61.7
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.6e-189 666.0 577 60.8
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 7.6e-189 664.5 581 62.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 7.6e-189 664.5 583 61.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.7e-188 663.3 590 62.0
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.5e-187 659.4 584 59.9
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.6e-186 655.2 593 58.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.0e-185 654.1 595 59.5
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.3e-185 653.7 578 61.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.8e-185 653.3 595 58.3
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.5e-184 650.2 588 58.5
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.3e-184 648.7 593 58.3
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 5.7e-184 648.3 593 58.0
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 7.4e-184 647.9 593 59.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.3e-183 647.1 578 58.8
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-183 646.4 593 57.8
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.1e-183 646.4 593 57.8
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.4e-182 642.9 584 58.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.4e-182 642.9 467 67.5
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.4e-179 633.6 588 57.7
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-178 630.6 470 67.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.0e-177 627.5 469 66.3
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.9e-177 625.5 579 59.2
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 5.1e-177 625.2 593 57.0
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.7e-177 624.8 589 55.5
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.5e-176 623.6 576 57.8
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.9e-176 623.2 450 70.0
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 5.7e-176 621.7 595 56.3
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-175 620.2 435 68.5
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.4e-174 616.3 582 57.4
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 5.3e-174 615.1 444 66.7
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-173 614.0 435 66.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-173 614.0 435 67.6
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.2e-173 614.0 435 66.7
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 7.7e-173 611.3 576 56.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 7.7e-173 611.3 462 64.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.0e-172 610.9 579 56.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.3e-172 610.5 435 67.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.3e-172 610.5 585 56.4
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.7e-172 610.1 586 57.5
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.7e-172 610.1 576 56.6
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 2.2e-172 609.8 593 55.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.8e-172 609.0 582 56.4
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.8e-172 609.0 567 57.7
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.9e-171 606.7 398 72.6
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 7.2e-171 604.7 577 56.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.2e-170 604.0 580 56.9
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.7e-170 602.8 475 62.7
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 3.6e-170 602.4 577 55.8
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.7e-167 592.4 581 54.6
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 6.3e-167 591.7 585 56.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.4e-166 590.5 585 56.2
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.0e-165 586.6 577 56.3
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.5e-165 585.5 575 55.1
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 7.7e-165 584.7 583 55.4
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-164 584.3 589 54.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 9.4e-163 577.8 593 54.3
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.6e-162 577.0 589 53.7
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-156 557.4 581 53.0
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 3.8e-156 555.8 401 66.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 5.5e-155 552.0 555 55.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.4e-155 551.2 586 52.9
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.7e-154 549.7 354 73.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.6e-154 549.3 583 53.7
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 4.7e-154 548.9 607 50.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 4.0e-153 545.8 384 66.9
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.4e-150 537.3 338 74.9
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.8e-143 512.3 585 52.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.8e-143 512.3 359 67.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.0e-140 502.3 580 52.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.4e-136 489.2 301 77.1
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.7e-133 479.9 547 47.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.2e-119 433.7 448 46.2
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.6e-114 417.5 492 51.2
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-98 364.8 398 51.3
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 3.8e-95 353.2 342 62.0
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 9.3e-94 348.6 383 43.9
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-93 348.2 357 54.9
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.0e-92 345.1 475 44.4
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 8.1e-90 335.5 190 79.5
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.2e-85 321.6 369 49.3
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-80 305.1 210 65.2
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.0e-77 292.7 313 53.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 7.4e-67 259.2 155 76.1
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 3.8e-55 220.3 232 52.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.4e-43 180.3 295 44.7
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.2e-42 177.9 238 50.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.5e-39 166.4 299 40.5
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.2e-38 162.9 200 50.0
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 7.7e-32 142.9 91 69.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.5e-31 139.8 91 68.1
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.7e-29 133.7 471 25.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.9e-23 114.4 115 49.6
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 6.6e-23 113.2 79 62.0
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.0e-20 104.0 152 44.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-19 102.4 69 63.8
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-19 102.1 69 63.8
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-18 98.2 69 62.3
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 5.9e-16 90.1 58 70.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.3e-15 89.0 180 30.0
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.7e-15 88.6 73 54.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.7e-10 72.0 98 44.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.2e-08 65.9 59 52.5
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.6e-06 57.0 80 42.5


User provided reference genes

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