Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 2.5e-150 535.4 271 100.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 4.3e-134 481.5 271 90.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.4e-121 439.9 270 83.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.1e-113 413.7 271 76.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 7.1e-113 411.0 259 82.6
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.5e-110 403.3 271 75.6
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 3.4e-107 392.1 270 74.4
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 9.3e-105 384.0 275 72.4
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.8e-103 379.8 272 73.9
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.2e-101 370.9 243 76.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 3.1e-100 369.0 240 76.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 5.3e-100 368.2 265 70.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.3e-100 368.2 247 74.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 9.0e-100 367.5 271 69.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.5e-99 366.7 235 78.3
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 6.5e-98 361.3 270 68.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.5e-98 361.3 247 72.9
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.4e-97 360.1 251 72.1
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.4e-97 360.1 273 70.0
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 9.3e-97 357.5 273 67.8
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 9.3e-97 357.5 235 77.9
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 9.3e-97 357.5 266 66.9
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.7e-96 355.9 272 67.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.0e-95 354.0 236 74.6
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 3.9e-95 352.1 262 67.2
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 5.1e-95 351.7 252 67.5
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.1e-94 350.5 265 64.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.1e-94 350.5 270 67.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.9e-94 349.7 271 67.2
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.3e-94 348.6 271 66.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 9.7e-94 347.4 265 67.2
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.8e-92 343.2 271 65.7
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 2.4e-92 342.8 242 69.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.1e-92 342.4 238 70.2
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.5e-91 340.1 271 65.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 2.0e-91 339.7 242 69.8
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.6e-91 339.3 275 65.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 6.5e-90 334.7 264 64.4
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 8.5e-90 334.3 232 73.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.9e-89 333.2 268 63.8
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.5e-89 332.8 271 64.2
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 5.5e-89 331.6 276 64.5
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 7.2e-89 331.3 279 62.7
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.2e-89 331.3 271 63.8
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 7.2e-89 331.3 276 64.5
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.2e-88 330.5 278 65.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.1e-88 329.7 279 62.4
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.6e-88 328.9 238 67.6
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 7.9e-88 327.8 263 65.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.0e-87 327.4 236 67.8
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.4e-87 327.0 272 63.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.8e-87 326.6 232 68.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.8e-87 326.6 265 64.9
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.9e-87 325.5 233 69.5
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 3.9e-87 325.5 269 63.6
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.2e-85 319.7 238 66.8
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.8e-85 319.3 264 62.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.1e-84 317.4 252 62.7
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.0e-84 314.7 252 62.3
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 7.0e-84 314.7 235 64.3
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.0e-84 314.7 241 66.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.6e-83 312.8 237 62.9
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 3.4e-83 312.4 236 64.8
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.3e-82 310.5 241 63.9
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.7e-82 310.1 278 57.9
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 6.5e-82 308.1 253 62.5
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.5e-81 306.2 258 62.0
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.2e-81 305.4 241 63.9
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.6e-80 303.5 255 60.8
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.6e-80 303.5 255 60.8
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 2.1e-80 303.1 255 60.8
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.1e-80 303.1 241 63.1
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 2.7e-80 302.8 255 60.8
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 2.7e-80 302.8 241 63.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 3.6e-80 302.4 241 63.5
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 6.1e-80 301.6 206 74.8
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.4e-79 300.4 258 61.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.4e-79 300.4 258 61.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-79 299.3 207 72.5
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 3.9e-79 298.9 241 64.7
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 6.7e-79 298.1 224 68.3
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 7.4e-78 294.7 239 62.8
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.7e-77 293.5 249 60.6
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 9.1e-76 287.7 192 76.0
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.0e-75 286.6 198 72.7
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.2e-74 283.1 271 59.4
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.0e-74 282.0 212 68.9
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 4.2e-73 278.9 198 71.7
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 3.0e-71 272.7 250 58.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.4e-68 263.8 245 57.6
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 4.1e-68 262.3 261 54.0
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 9.1e-68 261.2 257 53.7
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.2e-67 260.8 240 57.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.6e-67 260.4 224 60.7
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 4.5e-67 258.8 245 55.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.2e-66 256.5 219 59.8
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.5e-66 254.6 188 68.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.5e-65 253.1 230 54.8
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-62 243.4 180 68.3
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 7.0e-60 235.0 233 54.5
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 4.4e-54 215.7 160 68.1
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 4.9e-53 212.2 124 83.1
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-52 209.9 232 52.2
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-50 203.0 230 52.6
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.7e-45 186.0 145 63.4
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 3.2e-44 183.0 122 73.0
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 6.8e-39 165.2 218 41.3
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.2e-38 164.5 153 56.2
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-38 162.5 175 50.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-35 153.7 133 58.6
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.6e-35 152.5 125 61.6
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-33 146.4 258 39.9
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.1e-32 143.7 116 62.1
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.6e-26 121.7 103 58.3
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.2e-24 115.5 96 61.5
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.0e-23 112.8 86 61.6
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.7e-21 107.5 74 68.9
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-21 106.7 90 57.8
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-20 104.4 71 73.2
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-20 104.0 128 48.4
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.5e-17 93.6 185 38.9
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 3.3e-17 93.2 98 50.0
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.6e-16 90.9 70 60.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 4.7e-16 89.4 87 52.9
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.1e-15 88.2 91 50.5
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-15 87.0 99 48.5
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.4e-15 87.0 82 47.6
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.3e-15 85.9 88 48.9
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.5e-11 73.2 66 51.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.6e-11 72.8 85 47.1
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.8e-08 62.8 145 29.7
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.4e-07 61.2 52 65.4
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 2.6e-06 57.0 72 41.7
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-06 56.6 48 54.2
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 3.4e-06 56.6 48 47.9


User provided reference genes

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