Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 0.0e+00 2338.9 1214 100.0
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.3e-234 815.8 997 53.0
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 1.3e-233 814.3 1305 46.1
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.3e-210 736.5 1275 43.6
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 1.1e-107 396.0 331 65.3
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 3.0e-86 324.7 1318 29.9
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 9.1e-83 313.2 1420 29.5
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 1.6e-79 302.4 1580 27.3
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 1.1e-77 296.2 1434 27.3
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 1.0e-73 283.1 1502 27.0
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 4.2e-64 251.1 1335 27.9
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 7.2e-64 250.4 1171 28.9
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 6.1e-63 247.3 1370 26.7
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 6.1e-63 247.3 1504 26.5
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 5.2e-62 244.2 1280 28.0
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.5e-61 242.7 466 40.1
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 3.3e-61 241.5 1218 27.8
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 2.4e-59 235.3 1598 25.8
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 9.1e-59 233.4 1442 27.4
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 7.7e-58 230.3 1457 27.0
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 1.1e-56 226.5 1369 26.9
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 3.2e-56 224.9 1450 27.7
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 7.5e-53 213.8 1101 27.8
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 3.5e-50 204.9 1450 25.9
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 2.9e-49 201.8 1425 25.1
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.9e-48 199.1 1417 26.2
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 2.5e-48 198.7 1443 25.6
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 5.5e-48 197.6 1255 25.4
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 1.2e-47 196.4 1334 26.2
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 5.2e-46 191.0 1406 24.9
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 6.8e-46 190.7 948 28.9
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 1.2e-45 189.9 1408 26.0
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 2.2e-44 185.7 1509 24.3
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.1e-43 183.3 1346 25.0
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 1.2e-42 179.9 1445 24.2
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 1.2e-42 179.9 216 49.5
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 3.9e-41 174.9 1388 25.2
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.5e-40 172.9 1401 25.5
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 1.9e-40 172.6 1236 25.9
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 7.3e-40 170.6 1324 24.4
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.6e-39 169.5 1414 24.5
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 4.7e-39 167.9 1200 26.2
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 4.4e-37 161.4 1393 24.3
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.7e-36 159.5 1336 25.2
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 1.7e-36 159.5 173 54.3
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 3.2e-35 155.2 1314 25.0
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 2.0e-34 152.5 1339 23.9
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 2.7e-34 152.1 1385 24.4
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 7.8e-34 150.6 1226 23.8
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 6.6e-33 147.5 593 31.4
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 6.6e-33 147.5 1086 24.7
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 8.6e-33 147.1 1358 23.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.1e-32 146.7 764 27.4
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 1.9e-32 146.0 1382 23.7
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 9.5e-32 143.7 1374 24.6
Actinidia08383 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.1e-31 142.5 238 42.4
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.1e-30 140.2 649 29.7
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 1.4e-30 139.8 185 49.7
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 2.3e-30 139.0 1324 23.8
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 3.1e-30 138.7 1305 24.9
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 5.2e-30 137.9 1310 23.4
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 8.9e-30 137.1 1335 22.8
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 2.6e-29 135.6 1387 23.0
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 5.8e-29 134.4 1244 25.1
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.3e-28 133.3 1211 24.2
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 3.7e-28 131.7 1313 25.0
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 3.7e-28 131.7 289 35.3
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.9e-28 131.3 242 42.6
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 8.3e-28 130.6 102 68.6
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 1.1e-27 130.2 1347 24.1
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.4e-27 129.8 500 31.0
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 1.9e-27 129.4 241 41.1
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 4.6e-26 124.8 1323 25.1
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 7.8e-26 124.0 451 28.8
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 7.8e-26 124.0 514 28.6
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 1.0e-25 123.6 171 46.2
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 3.0e-25 122.1 141 44.7
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 6.6e-25 120.9 131 48.1
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 1.5e-24 119.8 124 49.2
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 2.5e-24 119.0 147 45.6
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.3e-24 118.6 96 61.5
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 9.5e-24 117.1 344 31.4
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 9.5e-24 117.1 529 28.9
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 3.6e-23 115.2 478 25.7
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 1.1e-22 113.6 1138 24.1
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 3.1e-22 112.1 132 50.0
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 4.0e-22 111.7 711 27.8
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 6.8e-22 110.9 368 28.8
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.0e-21 109.4 1056 24.8
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-21 109.4 254 39.8
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 2.6e-21 109.0 538 29.7
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 5.8e-21 107.8 702 28.2
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 7.5e-21 107.5 314 32.5
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 7.1e-19 100.9 136 47.8
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 6.6e-17 94.4 126 43.7
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 1.1e-16 93.6 126 43.7
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.5e-16 92.4 81 64.2
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 4.3e-16 91.7 157 43.3
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 9.5e-16 90.5 84 52.4
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.2e-15 90.1 120 41.7
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.6e-15 89.7 116 43.1
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 2.8e-15 89.0 368 27.7
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.5e-13 83.2 560 22.3
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 3.4e-13 82.0 434 26.7
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 3.4e-13 82.0 1159 21.2
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 5.8e-13 81.3 81 51.9
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.9e-12 79.0 113 38.9
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.9e-12 79.0 1005 22.0
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 3.8e-12 78.6 121 45.5
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 3.2e-11 75.5 184 35.3
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 1.6e-10 73.2 150 38.0
GSVIVG01032692001 Vitis vinifera HOM05D038408 ORTHO05D007296 2.7e-10 72.4 220 32.3
GSVIVG01033147001 Vitis vinifera HOM05D038408 ORTHO05D007296 1.7e-09 69.7 220 31.8
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 3.0e-09 68.9 376 26.1
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.9e-09 68.6 470 28.5
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 8.7e-09 67.4 115 34.8
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.6e-08 64.7 93 45.2
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 7.3e-08 64.3 90 46.7
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.6e-07 62.0 227 27.3
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 4.8e-07 61.6 345 29.0
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 4.8e-07 61.6 345 29.0
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 6.2e-07 61.2 162 36.4
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 8.1e-07 60.8 483 26.7
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 1.1e-06 60.5 428 28.3
Peaxi162Scf00072g00226 Petunia axillaris HOM05D006507 ORTHO05D007296 1.1e-06 60.5 116 33.6
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.1e-06 60.5 472 25.8
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.4e-06 60.1 423 27.0
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 1.4e-06 60.1 75 41.3
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 1.4e-06 60.1 79 45.6
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.8e-06 59.7 159 33.3
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.8e-06 59.7 73 45.2
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 3.1e-06 58.9 86 41.9
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 4.0e-06 58.5 82 41.5
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 5.3e-06 58.2 63 54.0
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 5.3e-06 58.2 75 42.7
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.3e-06 58.2 84 45.2
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 6.9e-06 57.8 322 29.5
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 6.9e-06 57.8 457 26.7
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 6.9e-06 57.8 159 30.2
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 9.0e-06 57.4 64 50.0
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 9.0e-06 57.4 68 47.1


User provided reference genes

Program Settings