Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.9e-97 357.8 184 100.0
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 9.6e-69 263.8 275 57.1
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.5e-66 256.5 274 55.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.6e-63 246.5 271 53.1
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.6e-63 246.5 288 51.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 3.5e-63 245.4 276 54.0
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.5e-63 245.4 374 44.7
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.7e-62 243.0 247 55.9
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.7e-62 243.0 270 52.6
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.0e-62 242.3 269 53.9
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-61 240.0 273 52.0
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-61 240.0 273 52.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.9e-61 239.6 269 52.4
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.3e-60 236.9 273 51.6
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-60 236.9 273 51.3
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.6e-60 236.5 271 51.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.1e-60 236.1 273 51.3
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-60 235.7 273 51.3
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.6e-60 235.3 271 50.2
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 4.8e-60 235.0 280 50.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 6.2e-60 234.6 272 51.8
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 6.2e-60 234.6 272 51.8
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 8.1e-60 234.2 271 51.3
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 8.1e-60 234.2 271 50.6
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-59 233.8 271 49.8
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.1e-59 233.8 273 50.5
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.4e-59 233.4 271 51.3
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.4e-59 233.4 272 51.8
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.4e-59 233.4 272 50.7
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 5.3e-59 231.5 269 50.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.3e-59 231.5 270 50.7
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 5.3e-59 231.5 271 50.2
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 9.0e-59 230.7 271 52.0
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.2e-58 230.3 272 51.5
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.5e-58 229.9 281 49.8
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.6e-58 229.2 271 52.0
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 3.4e-58 228.8 270 50.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.4e-58 228.8 270 49.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 7.6e-58 227.6 273 48.4
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 9.9e-58 227.3 274 50.7
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.7e-57 226.5 271 52.0
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.7e-57 226.5 270 50.0
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.2e-57 226.1 269 50.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.2e-57 226.1 270 51.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.9e-57 225.7 271 51.7
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.9e-57 225.7 274 50.0
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 3.8e-57 225.3 273 48.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 3.8e-57 225.3 273 48.4
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 4.9e-57 224.9 270 49.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 4.9e-57 224.9 273 50.2
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.9e-57 224.9 271 49.1
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.4e-57 224.6 265 50.2
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 6.4e-57 224.6 270 51.9
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.1e-56 223.8 271 49.4
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.4e-56 223.4 273 50.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.4e-56 222.6 270 49.6
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.4e-56 222.6 274 49.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 4.2e-56 221.9 274 49.3
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 4.2e-56 221.9 270 49.6
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 5.4e-56 221.5 270 50.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 5.4e-56 221.5 274 48.9
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.1e-56 221.1 274 48.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 7.1e-56 221.1 270 50.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.2e-55 220.3 271 50.2
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.6e-55 219.9 271 48.3
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.6e-55 219.9 269 50.6
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.1e-55 219.5 271 49.4
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.7e-55 219.2 271 49.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.7e-55 219.2 271 50.6
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.5e-55 218.8 269 48.3
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.0e-54 217.2 271 49.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.0e-54 217.2 270 49.3
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.0e-54 217.2 274 47.8
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-54 216.9 269 49.8
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.7e-54 216.5 271 48.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-54 216.5 274 47.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.7e-54 216.5 271 49.1
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.9e-54 215.3 148 79.7
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.9e-54 215.3 148 79.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.6e-54 214.5 284 45.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.1e-53 213.8 270 48.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.5e-53 213.4 269 48.7
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.5e-53 212.6 272 48.5
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.5e-53 212.6 315 43.5
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.6e-52 209.9 272 48.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 2.1e-52 209.5 272 47.8
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.1e-52 209.5 301 45.2
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.6e-52 208.8 335 41.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 6.2e-52 208.0 272 47.1
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 8.1e-52 207.6 272 47.1
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 8.1e-52 207.6 272 47.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-51 207.2 272 47.1
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.1e-51 207.2 272 47.4
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.4e-51 206.8 274 47.4
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.4e-51 206.1 272 47.1
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 4.0e-51 205.3 272 47.1
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 9.0e-51 204.1 272 46.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.3e-49 200.3 271 46.1
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-49 199.9 122 84.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.2e-49 199.5 265 46.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.2e-49 199.5 274 44.5
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-49 199.1 270 46.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-49 199.1 270 46.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.9e-49 199.1 270 46.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.8e-49 198.7 271 45.8
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.9e-49 198.4 270 45.9
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 6.4e-49 198.0 316 41.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 8.4e-49 197.6 120 82.5
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.4e-48 196.8 271 43.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-48 196.4 120 84.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.2e-48 195.3 264 45.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 7.1e-48 194.5 122 80.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 9.3e-48 194.1 237 48.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.6e-47 193.4 119 81.5
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.1e-47 193.0 265 43.4
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.7e-47 192.6 274 45.3
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-46 189.9 202 54.5
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-45 186.0 216 50.5
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.7e-44 182.2 218 49.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.7e-44 182.2 253 45.8
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 8.1e-44 181.0 267 42.7
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-43 180.3 235 47.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.4e-43 180.3 256 44.1
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.4e-43 179.5 263 42.2
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 4.0e-43 178.7 270 40.0
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-42 176.8 236 46.6
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 3.4e-42 175.6 243 44.9
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 5.8e-42 174.9 245 44.5
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-41 172.9 247 43.7
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 4.9e-41 171.8 245 44.1
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 4.9e-41 171.8 119 73.1
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.1e-40 170.6 265 39.6
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-39 166.4 245 43.3
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.1e-39 166.4 270 38.5
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.8e-38 163.3 112 76.8
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.3e-38 162.9 263 38.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 6.7e-38 161.4 263 38.4
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 7.4e-37 157.9 263 37.6
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 7.4e-37 157.9 132 65.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 9.6e-37 157.5 100 79.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.7e-36 155.6 96 82.3
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-35 154.1 241 42.3
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 6.9e-35 151.4 119 63.9
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.5e-34 150.2 129 59.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.5e-34 150.2 249 41.0
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.6e-34 149.4 102 74.5
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.5e-33 144.8 120 64.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 8.4e-33 144.4 133 58.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.4e-32 143.7 262 34.7
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.6e-31 138.7 211 44.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.0e-30 136.0 107 65.4
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.7e-30 134.8 116 62.9
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 4.8e-28 128.6 222 40.1
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.8e-27 126.7 107 61.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.9e-27 124.8 119 55.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 3.9e-22 109.0 108 54.6
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.7e-22 108.2 122 56.6
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.0e-21 106.7 73 78.1
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.3e-21 105.5 123 52.8
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-18 97.4 132 48.5
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-17 92.8 52 88.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 3.8e-17 92.4 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-17 92.4 52 86.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 8.5e-17 91.3 52 86.5
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-16 90.1 52 86.5
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 5.5e-16 88.6 64 62.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.2e-15 87.4 60 71.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-15 86.7 50 84.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.6e-15 85.9 107 43.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.6e-15 85.9 59 74.6
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.0e-14 84.3 67 59.7
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 5.7e-13 78.6 107 41.1
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.7e-12 75.9 65 56.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.7e-12 75.9 65 56.9
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.4e-11 73.2 65 53.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.1e-11 72.8 65 55.4
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.6e-10 69.7 46 67.4
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.5e-10 68.9 60 63.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.9e-08 63.5 91 39.6
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-07 60.8 51 54.9
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.6e-07 60.5 40 75.0


User provided reference genes

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