Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.0e-94 350.1 184 100.0
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.3e-81 306.6 185 89.7
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.3e-61 238.4 189 72.0
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.0e-54 215.7 188 66.0
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 8.7e-54 214.2 188 64.9
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.1e-53 213.8 188 65.4
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 2.8e-52 209.1 181 65.2
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 2.8e-52 209.1 181 65.2
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 2.8e-52 209.1 181 65.2
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 8.4e-49 197.6 186 61.3
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 4.6e-47 191.8 186 60.8
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.3e-43 178.3 188 58.0
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 7.6e-42 174.5 182 57.7
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 7.6e-42 174.5 187 53.5
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.0e-41 174.1 187 56.1
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.8e-41 172.2 189 59.3
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.9e-40 169.9 189 55.0
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.9e-40 169.9 189 56.6
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 3.2e-40 169.1 184 54.9
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 9.3e-40 167.5 189 54.5
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.2e-39 167.2 188 52.7
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.6e-39 166.8 189 54.5
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 3.5e-39 165.6 190 54.7
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.0e-38 164.1 187 52.9
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 3.9e-38 162.2 199 50.8
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 6.7e-38 161.4 187 54.0
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 8.7e-38 161.0 187 53.5
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.9e-37 159.8 184 52.2
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 3.3e-37 159.1 187 53.5
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 4.3e-37 158.7 186 53.8
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.3e-37 158.7 188 53.7
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 4.3e-37 158.7 182 54.4
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.8e-36 156.0 183 55.2
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.7e-36 155.6 184 53.3
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 3.7e-36 155.6 189 55.6
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 4.8e-36 155.2 180 54.4
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 4.8e-36 155.2 184 53.3
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 8.2e-36 154.5 180 53.3
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.1e-35 154.1 183 53.6
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.4e-35 153.7 183 53.6
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.4e-35 153.7 183 54.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.8e-35 153.3 187 52.9
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 6.9e-35 151.4 182 53.8
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 9.0e-35 151.0 184 52.2
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 9.0e-35 151.0 187 53.5
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 9.0e-35 151.0 202 53.0
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.0e-34 149.8 189 52.4
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 2.0e-34 149.8 189 52.4
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.6e-34 149.4 182 50.5
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 5.8e-34 148.3 189 49.7
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.0e-33 147.5 189 55.0
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.2e-33 146.4 182 53.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.2e-33 146.4 190 49.5
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 5.0e-33 145.2 189 52.4
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.4e-33 144.4 181 53.6
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 8.4e-33 144.4 189 50.3
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.1e-32 144.1 184 51.6
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.1e-32 144.1 178 52.2
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.4e-32 143.7 187 50.8
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.4e-32 143.7 187 51.3
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.5e-32 142.9 190 52.1
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.2e-32 142.5 188 47.9
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.2e-32 142.5 184 50.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 4.2e-32 142.1 193 48.2
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 9.3e-32 141.0 178 51.7
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.2e-31 140.6 181 50.3
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 1.2e-31 140.6 187 50.3
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.2e-31 140.6 180 52.8
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.2e-31 140.6 186 51.1
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.2e-31 140.6 189 49.7
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.2e-31 140.6 189 52.4
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.7e-31 139.4 187 49.7
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 2.7e-31 139.4 180 51.1
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.7e-31 139.4 179 50.3
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.5e-31 139.0 189 50.3
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 6.1e-31 138.3 188 50.5
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.9e-31 137.9 177 52.0
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.0e-30 137.5 189 49.7
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.0e-30 137.5 177 52.0
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 3.9e-30 135.6 184 48.9
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 5.1e-30 135.2 182 50.0
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.7e-30 134.4 194 50.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.9e-29 133.3 181 49.2
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.3e-29 132.5 169 51.5
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 5.7e-29 131.7 189 47.1
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.3e-28 130.6 170 52.9
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.8e-28 129.4 190 47.4
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 6.3e-28 128.3 182 47.3
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 8.2e-28 127.9 196 48.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 8.2e-28 127.9 169 50.3
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.1e-27 127.5 207 47.8
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.4e-27 127.1 183 44.8
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 5.3e-27 125.2 181 47.0
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 5.3e-27 125.2 180 48.9
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 5.3e-27 125.2 180 48.9
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 5.3e-27 125.2 180 48.9
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 6.9e-27 124.8 195 46.2
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.2e-26 124.0 103 65.0
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.0e-26 123.2 182 46.7
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 3.4e-26 122.5 185 46.5
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 5.9e-26 121.7 182 48.4
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 7.7e-26 121.3 188 47.9
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.3e-25 120.6 180 47.8
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.7e-25 120.2 179 48.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 2.9e-25 119.4 178 44.4
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 3.8e-25 119.0 200 42.5
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 6.5e-25 118.2 99 66.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.9e-24 116.7 182 44.5
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 3.2e-24 115.9 180 45.6
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.6e-23 113.6 189 47.6
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 6.1e-23 111.7 132 53.8
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.8e-20 102.1 184 44.0
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.4e-19 100.5 222 39.2
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.1e-19 99.4 176 46.0
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 5.3e-19 98.6 170 44.1
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 5.3e-19 98.6 75 66.7
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.5e-18 97.1 152 45.4
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-18 95.9 170 43.5
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 5.9e-18 95.1 176 42.0
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.9e-17 92.8 82 63.4
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 1.1e-16 90.9 154 42.2
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.2e-16 89.4 164 42.1
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.5e-13 80.5 139 41.7
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 2.0e-13 80.1 171 40.4
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.3e-13 79.3 179 38.0
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 4.4e-13 79.0 172 40.1
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-11 73.2 168 39.3
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.1e-11 72.8 73 60.3
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 4.5e-10 68.9 141 41.1
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.7e-10 68.2 195 33.3
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.7e-09 67.0 195 32.8
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.0e-09 65.5 217 31.3
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 3.2e-08 62.8 185 34.1
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.2e-08 62.4 217 30.9
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 7.2e-08 61.6 196 31.1
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.2e-07 60.8 88 43.2
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 1.2e-07 60.8 64 59.4
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 5.2e-06 55.5 81 46.9
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 6.7e-06 55.1 137 35.8


User provided reference genes

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