Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.8e-219 765.8 427 100.0
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 6.0e-191 671.0 467 83.1
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.0e-169 600.5 438 77.9
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 2.9e-169 599.0 451 78.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 9.4e-160 567.4 452 73.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.7e-156 556.6 451 72.3
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.7e-156 556.6 451 72.3
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.1e-155 553.9 450 71.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.9e-152 543.1 448 71.4
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.7e-148 530.0 450 69.1
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.3e-147 525.0 450 69.6
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.3e-145 520.4 450 67.6
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.7e-145 520.0 449 69.0
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.9e-145 519.2 451 67.8
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 5.0e-145 518.5 452 67.3
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.1e-144 517.3 427 71.4
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 8.0e-143 511.1 450 67.8
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.0e-142 508.8 452 70.1
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.5e-141 506.9 450 66.7
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.0e-141 506.5 450 66.9
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.6e-141 506.1 450 67.1
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 7.5e-141 504.6 450 66.9
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 6.3e-140 501.5 450 66.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 6.3e-140 501.5 450 66.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.3e-139 498.4 448 66.5
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 9.1e-139 497.7 450 66.9
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.2e-138 497.3 439 69.0
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-138 497.3 450 66.2
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.7e-138 496.1 448 66.3
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.9e-138 495.0 450 65.8
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.0e-137 494.2 448 66.1
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.3e-137 493.8 450 65.3
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.7e-137 493.4 450 64.4
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.8e-137 492.3 456 64.5
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.0e-137 491.9 450 66.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.5e-136 490.3 448 64.7
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.2e-135 487.3 457 64.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 6.1e-135 485.0 444 65.5
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 8.8e-134 481.1 451 63.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.0e-133 479.9 443 62.3
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 6.3e-132 474.9 450 63.1
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 3.1e-131 472.6 453 63.4
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.1e-131 472.6 452 63.5
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 4.1e-131 472.2 457 62.4
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 4.1e-131 472.2 450 62.9
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 4.5e-130 468.8 456 63.2
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.5e-128 461.8 447 60.9
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 7.2e-128 461.5 450 62.7
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 7.2e-128 461.5 457 61.9
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.6e-127 460.3 447 60.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 4.7e-127 458.8 425 65.6
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.8e-126 456.8 450 60.9
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 3.0e-126 456.1 450 61.6
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 4.0e-126 455.7 448 62.5
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.3e-124 450.7 450 60.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 6.3e-124 448.4 450 62.4
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.4e-123 446.4 446 60.3
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 4.1e-123 445.7 480 58.8
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 7.0e-123 444.9 450 58.4
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 7.0e-123 444.9 441 60.3
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 9.2e-123 444.5 452 59.1
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.5e-122 442.6 446 58.1
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 4.5e-122 442.2 450 58.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.3e-121 440.7 450 58.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.8e-121 439.1 456 60.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 3.8e-121 439.1 448 60.9
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.1e-120 437.6 458 58.7
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.9e-120 436.8 451 59.4
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 7.3e-120 434.9 451 59.2
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 2.1e-119 433.3 450 61.6
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.4e-118 430.6 468 56.2
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.8e-118 430.3 451 58.1
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 3.1e-118 429.5 448 60.3
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 8.9e-118 427.9 446 60.3
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.5e-117 427.2 463 59.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 4.4e-117 425.6 452 57.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 5.8e-117 425.2 450 59.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.7e-116 423.7 448 59.8
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.7e-116 423.7 439 59.9
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.7e-116 423.7 439 59.9
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.9e-116 422.9 452 60.2
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 4.9e-116 422.2 448 59.4
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.0e-114 416.8 496 55.2
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.7e-114 416.4 448 59.2
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 7.8e-114 414.8 452 57.1
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-113 414.5 448 58.5
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.3e-113 413.3 431 58.0
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.5e-112 409.8 453 57.8
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-111 406.4 388 63.4
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 2.9e-108 396.4 448 56.9
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 2.4e-107 393.3 452 54.4
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 8.1e-103 378.3 448 56.0
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 4.0e-102 375.9 448 56.7
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.6e-101 373.2 425 55.3
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.3e-100 368.2 380 58.7
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.3e-96 356.3 467 50.3
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.3e-96 355.9 364 61.0
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 8.4e-92 341.7 366 59.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 7.1e-91 338.6 472 49.4
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.9e-88 330.5 327 59.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.3e-88 329.3 313 63.3
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.4e-86 324.3 282 65.6
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.4e-86 323.6 460 47.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.3e-86 322.4 278 66.2
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.6e-85 320.1 449 48.3
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 5.8e-85 318.9 379 54.9
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.2e-84 317.0 438 49.1
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.9e-84 315.8 432 49.8
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.3e-80 303.1 392 50.5
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 3.1e-78 296.6 420 48.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 4.3e-72 276.2 461 41.9
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.5e-67 260.4 325 54.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 6.1e-58 229.2 225 64.0
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 7.4e-56 222.2 365 47.4
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.2e-55 220.7 258 57.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 6.3e-55 219.2 225 60.9
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.5e-52 209.1 201 62.7
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-51 208.4 244 53.7
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.8e-49 201.1 199 57.3
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.8e-44 183.3 201 57.7
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-43 181.4 179 60.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 4.2e-43 179.9 153 68.6
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 2.7e-42 177.2 228 53.9
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.4e-38 164.1 129 70.5
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 3.5e-37 160.2 164 57.9
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 2.5e-35 154.1 368 35.9
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 7.2e-35 152.5 376 32.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 8.8e-33 145.6 458 30.8
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.3e-31 141.7 272 40.8
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 4.8e-31 139.8 135 60.7
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.1e-30 135.6 174 52.3
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 4.5e-29 133.3 452 30.3
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 6.3e-23 112.8 93 68.8
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 7.0e-22 109.4 82 75.6
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 3.2e-19 100.5 169 45.6
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.3e-17 94.4 167 44.9
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.5e-16 91.7 133 48.1
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-15 88.6 95 57.9
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.9e-12 77.4 96 54.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-10 72.0 53 79.2
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 2.6e-08 64.3 37 81.1
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 2.2e-07 61.2 183 27.9
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 4.1e-06 57.0 139 37.4


User provided reference genes

Program Settings