Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0075600 Rhododendron simsii HOM05D018264 ORTHO05D018096 7.0e-113 410.6 204 100.0
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 1.9e-73 279.6 174 81.0
Rhsim06G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.3e-46 188.7 136 64.0
Rhsim09G0012500 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.5e-33 145.2 138 49.3
Rhsim02G0196000 Rhododendron simsii HOM05D018264 ORTHO05D018096 1.4e-31 140.6 106 65.1
vmacro06901 Vaccinium macrocarpon HOM05D004933 ORTHO05D005465 6.5e-26 121.7 171 40.4
Rhsim07G0161500 Rhododendron simsii HOM05D018264 ORTHO05D018096 6.7e-23 111.7 219 40.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.2e-19 100.9 132 40.9
Rhsim12G0010600 Rhododendron simsii HOM05D018264 ORTHO05D018096 2.2e-13 80.1 67 53.7
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 6.3e-13 78.6 124 35.5
vmacro12949 Vaccinium macrocarpon HOM05D001623 ORTHO05D001473 5.3e-12 75.5 117 40.2
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-11 74.3 147 31.3
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 2.7e-11 73.2 131 30.5
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.5e-11 72.8 146 30.1
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.0e-10 71.2 146 28.1
COL.COLO4_22232 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.9e-10 69.7 127 31.5
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.9e-10 69.7 129 32.6
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 2.9e-10 69.7 134 35.8
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 2.9e-10 69.7 155 32.3
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 3.8e-10 69.3 146 28.1
COL.COLO4_20252 Corchorus olitorius HOM05D000003 ORTHO05D007254 5.0e-10 68.9 129 33.3
COL.COLO4_35856 Corchorus olitorius HOM05D000003 ORTHO05D000004 8.5e-10 68.2 130 30.0
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-09 67.4 211 31.8
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.9e-09 67.0 137 31.4
LjContig00564g0011142 Lotus japonicus HOM05D000003 ORTHO05D007254 1.9e-09 67.0 128 31.2
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.5e-09 66.6 124 35.5
Rhsim11G0140100 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.5e-09 66.6 53 47.2
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-09 65.9 126 35.7
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 4.2e-09 65.9 149 30.9
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-09 65.5 135 31.1
CANSAT11G2108 Cannabis sativa HOM05D000003 ORTHO05D009135 5.5e-09 65.5 124 36.3
FvH4_6g16031 Fragaria vesca HOM05D000003 ORTHO05D009449 5.5e-09 65.5 144 29.9
Rhsim09G0146400 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.2e-09 65.1 123 33.3
RcHm_v2.0_Chr7g0217171 Rosa chinensis HOM05D000003 ORTHO05D000167 9.4e-09 64.7 165 29.1
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-08 64.3 151 33.1
Lj3g0004568 Lotus japonicus HOM05D000003 ORTHO05D007254 1.2e-08 64.3 135 30.4
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-08 64.3 181 28.7
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-08 63.5 135 33.3
COL.COLO4_08141 Corchorus olitorius HOM05D019840 ORTHO05D009449 2.7e-08 63.2 136 30.1
COL.COLO4_20835 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.6e-08 62.8 130 30.8
FvH4_3g14382 Fragaria vesca HOM05D000003 ORTHO05D006737 3.6e-08 62.8 127 29.1
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 3.6e-08 62.8 130 33.8
COL.COLO4_27602 Corchorus olitorius HOM05D013144 ORTHO05D009449 4.7e-08 62.4 73 42.5
FvH4_3g02851 Fragaria vesca HOM05D013659 ORTHO05D012679 4.7e-08 62.4 130 33.1
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 4.7e-08 62.4 106 34.9
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.7e-08 62.4 149 30.2
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.1e-08 62.0 142 28.9
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 6.1e-08 62.0 144 28.5
CANSAT54G1882 Cannabis sativa HOM05D000003 ORTHO05D009135 8.0e-08 61.6 124 35.5
Lj4C877T10 Lonicera japonica HOM05D000003 ORTHO05D000167 1.0e-07 61.2 128 28.1
Ah.12g061370 Amaranthus hybridus HOM05D000003 ORTHO05D000167 1.4e-07 60.8 130 31.5
Lj2g0023475 Lotus japonicus HOM05D000003 ORTHO05D007254 1.4e-07 60.8 124 25.8
Prupe.8G042700 Prunus persica HOM05D000003 ORTHO05D009449 1.4e-07 60.8 118 30.5
Lj1P809T7 Lonicera japonica HOM05D000003 ORTHO05D000167 3.0e-07 59.7 105 29.5
RcHm_v2.0_Chr1g0347191 Rosa chinensis HOM05D000003 ORTHO05D000004 3.0e-07 59.7 140 28.6
FvH4_7g04921 Fragaria vesca HOM05D000003 ORTHO05D000167 4.0e-07 59.3 143 30.1
Lj9P2T15 Lonicera japonica HOM05D000003 ORTHO05D000167 4.0e-07 59.3 110 27.3
Atru.chr11.542 Acer truncatum HOM05D000003 ORTHO05D000167 5.2e-07 58.9 108 29.6
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 5.2e-07 58.9 66 42.4
Aa31LG9G6690 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.8e-07 58.5 108 27.8
CANSAT25G0840 Cannabis sativa HOM05D000003 ORTHO05D009135 8.8e-07 58.2 124 30.6
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 8.8e-07 58.2 100 31.0
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 8.8e-07 58.2 146 29.5
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 8.8e-07 58.2 151 29.1
AUR62034608 Chenopodium quinoa HOM05D009702 ORTHO05D000004 8.8e-07 58.2 138 29.0
COL.COLO4_18924 Corchorus olitorius HOM05D000003 ORTHO05D009449 8.8e-07 58.2 124 30.6
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 8.8e-07 58.2 134 30.6
vmacro03056 Vaccinium macrocarpon HOM05D000511 ORTHO05D000413 8.8e-07 58.2 123 32.5
COL.COLO4_16660 Corchorus olitorius HOM05D008133 ORTHO05D007254 1.2e-06 57.8 119 32.8
Rhsim10G0105300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-06 57.8 140 31.4
Atru.chr11.1957 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 57.4 106 28.3
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-06 57.4 138 31.9
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 57.4 125 29.6
COL.COLO4_36554 Corchorus olitorius HOM05D000003 ORTHO05D015627 1.5e-06 57.4 114 31.6
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.5e-06 57.4 38 73.7
CiPaw.01G090400 Carya illinoinensis HOM05D000003 ORTHO05D000167 2.6e-06 56.6 142 25.4
CiPaw.07G081000 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.6e-06 56.6 128 30.5
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 2.6e-06 56.6 150 26.7
PSO384G0027 Papaver somniferum HOM05D007919 ORTHO05D006738 2.6e-06 56.6 121 25.6
PSO384G4399 Papaver somniferum HOM05D000003 ORTHO05D001026 2.6e-06 56.6 116 29.3
Rhsim01G0069500 Rhododendron simsii HOM05D003046 ORTHO05D003428 2.6e-06 56.6 38 73.7
Rhsim01G0199300 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.6e-06 56.6 146 28.1
CANSAT25G2032 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-06 56.2 95 29.5
Manes.10G114432 Manihot esculenta HOM05D020758 ORTHO05D000167 3.4e-06 56.2 103 31.1
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 55.8 135 31.1
RcHm_v2.0_Chr4g0415961 Rosa chinensis HOM05D000003 ORTHO05D000167 4.4e-06 55.8 134 30.6
TAR369G0511 Trochodendron aralioides HOM05D067606 ORTHO05D051489 4.4e-06 55.8 131 31.3
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-06 55.5 132 28.0
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-06 55.5 94 26.6
CiPaw.09G167800 Carya illinoinensis HOM05D000003 ORTHO05D000004 5.7e-06 55.5 108 27.8
COL.COLO4_16656 Corchorus olitorius HOM05D013144 ORTHO05D009449 5.7e-06 55.5 80 38.8
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 5.7e-06 55.5 135 25.2
QL03p039168 Quercus lobata HOM05D000003 ORTHO05D000167 5.7e-06 55.5 132 28.8
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 5.7e-06 55.5 139 29.5
Aa31sc244G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.5e-06 55.1 98 31.6
CANSAT80G0055 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 55.1 124 29.8
CANSAT80G2317 Cannabis sativa HOM05D000003 ORTHO05D000167 7.5e-06 55.1 140 30.0
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 55.1 149 25.5
COL.COLO4_14554 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.5e-06 55.1 142 26.8
PSO210G4219 Papaver somniferum HOM05D003407 ORTHO05D001026 7.5e-06 55.1 124 29.8
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 7.5e-06 55.1 149 27.5
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 7.5e-06 55.1 127 31.5
SHI45994 Sapria himalayana HOM05D000003 ORTHO05D000004 7.5e-06 55.1 137 26.3
PSO017G4456 Papaver somniferum HOM05D003407 ORTHO05D001026 9.8e-06 54.7 160 25.6
PSO210G2509 Papaver somniferum HOM05D007919 ORTHO05D006738 9.8e-06 54.7 137 28.5
Rhsim13G0214300 Rhododendron simsii HOM05D018264 ORTHO05D018096 9.8e-06 54.7 49 57.1


User provided reference genes

Program Settings