Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0073500 Rhododendron simsii HOM05D001332 ORTHO05D001894 2.0e-59 232.3 119 100.0
Rhsim13G0073300 Rhododendron simsii HOM05D001332 ORTHO05D001894 3.0e-23 112.1 97 64.9
Rhsim13G0073400 Rhododendron simsii HOM05D001332 ORTHO05D001894 9.7e-22 107.1 97 62.9
QL93p0183_0037 Quercus lobata HOM05D001332 ORTHO05D001894 2.6e-19 99.0 97 56.7
QL01p027101 Quercus lobata HOM05D001332 ORTHO05D001894 4.5e-19 98.2 97 55.7
Actinidia25141 Actinidia chinensis HOM05D001332 ORTHO05D001894 1.0e-18 97.1 97 58.8
Haze_24246 Corylus avellana HOM05D001332 ORTHO05D001894 2.9e-18 95.5 97 56.7
Eucgr.J01944 Eucalyptus grandis HOM05D001332 ORTHO05D001894 3.8e-18 95.1 97 53.6
Cfa011640 Carpinus fangiana HOM05D001332 ORTHO05D001894 1.4e-17 93.2 97 55.7
FvH4_3g38010 Fragaria vesca HOM05D001332 ORTHO05D001894 1.4e-17 93.2 98 56.1
FvH4_3g38060 Fragaria vesca HOM05D001332 ORTHO05D001894 1.4e-17 93.2 98 56.1
FAN11G1207 Fragaria x ananassa HOM05D001332 ORTHO05D001894 1.4e-17 93.2 98 56.1
FAN25G3843 Fragaria x ananassa HOM05D001332 ORTHO05D001894 1.4e-17 93.2 103 54.4
QL01p027139 Quercus lobata HOM05D001332 ORTHO05D001894 1.4e-17 93.2 97 54.6
Ciclev10029463m.g Citrus clementina HOM05D001332 ORTHO05D001894 4.2e-17 91.7 97 53.6
Gohir.A05G090600 Gossypium hirsutum HOM05D001332 ORTHO05D001894 4.2e-17 91.7 95 53.7
Gorai.009G094100 Gossypium raimondii HOM05D001332 ORTHO05D001894 4.2e-17 91.7 95 53.7
TWI75G1181 Tripterygium wilfordii HOM05D001332 ORTHO05D001894 7.2e-17 90.9 97 55.7
Dinv28605 Davidia involucrata HOM05D001332 ORTHO05D001894 9.4e-17 90.5 97 54.6
FAN16G0327 Fragaria x ananassa HOM05D001332 ORTHO05D001894 9.4e-17 90.5 98 55.1
Gohir.D05G091500 Gossypium hirsutum HOM05D001332 ORTHO05D001894 9.4e-17 90.5 103 51.5
Manes.17G018900 Manihot esculenta HOM05D001332 ORTHO05D001894 9.4e-17 90.5 97 55.7
Gohir.A05G090500 Gossypium hirsutum HOM05D001332 ORTHO05D001894 1.2e-16 90.1 103 50.5
QL01p027096 Quercus lobata HOM05D001332 ORTHO05D001894 1.2e-16 90.1 97 54.6
CANSAT54G0012 Cannabis sativa HOM05D001332 ORTHO05D001894 2.7e-16 89.0 100 52.0
CiPaw.13G082100 Carya illinoinensis HOM05D001332 ORTHO05D001894 2.7e-16 89.0 97 53.6
COL.COLO4_19099 Corchorus olitorius HOM05D001332 ORTHO05D001894 3.6e-16 88.6 97 52.6
RcHm_v2.0_Chr5g0068381 Rosa chinensis HOM05D001332 ORTHO05D001894 3.6e-16 88.6 95 52.6
Duzib150G1063 Durio zibethinus HOM05D001332 ORTHO05D001894 4.6e-16 88.2 97 51.5
Gohir.D05G091600 Gossypium hirsutum HOM05D001332 ORTHO05D001894 4.6e-16 88.2 95 52.6
Nitab4.5_0000744g0160 Nicotiana tabacum HOM05D001332 ORTHO05D001894 6.1e-16 87.8 106 50.9
CSS0016525 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 7.9e-16 87.4 97 53.6
CSS0035664 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 7.9e-16 87.4 97 53.6
RcHm_v2.0_Chr5g0068411 Rosa chinensis HOM05D001332 ORTHO05D001894 1.0e-15 87.0 98 55.1
CANSAT54G0936 Cannabis sativa HOM05D001332 ORTHO05D001894 1.8e-15 86.3 100 50.0
Thecc.09G306600 Theobroma cacao HOM05D001332 ORTHO05D001894 1.8e-15 86.3 97 51.5
CSS0019650 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 2.3e-15 85.9 97 53.6
Gohir.D03G118400 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.3e-15 85.9 97 49.5
Gorai.003G124800 Gossypium raimondii HOM05D001332 ORTHO05D001894 2.3e-15 85.9 97 49.5
Hma1.2p1_0227F.1_g096190 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 3.0e-15 85.5 98 53.1
Hma1.2p1_0227F.1_g096200 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 3.0e-15 85.5 97 53.6
MD11G1081500 Malus domestica HOM05D001332 ORTHO05D001894 3.0e-15 85.5 97 52.6
CAN.G394.100 Capsicum annuum HOM05D001332 ORTHO05D001894 5.1e-15 84.7 98 52.0
FvH4_3g37930 Fragaria vesca HOM05D001332 ORTHO05D001894 5.1e-15 84.7 95 51.6
Gohir.A03G048700 Gossypium hirsutum HOM05D001332 ORTHO05D001894 5.1e-15 84.7 97 48.5
Prupe.6G061800 Prunus persica HOM05D001332 ORTHO05D001894 8.8e-15 84.0 100 50.0
MBI14_g32945_MAGBIO Magnolia biondii HOM05D001332 ORTHO05D001894 1.5e-14 83.2 97 51.5
RcHm_v2.0_Chr5g0068361 Rosa chinensis HOM05D001332 ORTHO05D001894 2.5e-14 82.4 97 49.5
PGSC0003DMG400030434 Solanum tuberosum HOM05D001332 ORTHO05D001894 2.5e-14 82.4 98 50.0
Solyc06g076690.4 Solanum lycopersicum HOM05D001332 ORTHO05D001894 3.3e-14 82.0 98 50.0
Sopen06g033080 Solanum pennellii HOM05D001332 ORTHO05D001894 3.3e-14 82.0 98 50.0
Gorai.009G094000 Gossypium raimondii HOM05D001332 ORTHO05D001894 4.3e-14 81.6 93 51.6
Peaxi162Scf01058g00147 Petunia axillaris HOM05D001332 ORTHO05D001894 4.3e-14 81.6 98 51.0
MD03G1077500 Malus domestica HOM05D001332 ORTHO05D001894 5.7e-14 81.3 97 48.5
RcHm_v2.0_Chr5g0068441 Rosa chinensis HOM05D001332 ORTHO05D001894 5.7e-14 81.3 95 49.5
Nitab4.5_0010287g0020 Nicotiana tabacum HOM05D001332 ORTHO05D001894 7.4e-14 80.9 98 51.0
Sed0017259 Sechium edule HOM05D001332 ORTHO05D001894 7.4e-14 80.9 97 48.5
Cpa.g.sc9.219 Carica papaya HOM05D001332 ORTHO05D001894 1.3e-13 80.1 95 50.5
RcHm_v2.0_Chr5g0068391 Rosa chinensis HOM05D001332 ORTHO05D001894 1.3e-13 80.1 95 49.5
Prupe.6G062300 Prunus persica HOM05D001332 ORTHO05D001894 1.7e-13 79.7 98 52.0
TAR623G1433 Trochodendron aralioides HOM05D001332 ORTHO05D001894 1.7e-13 79.7 95 50.5
AUR62020089 Chenopodium quinoa HOM05D001332 ORTHO05D001894 2.8e-13 79.0 97 51.5
PGR091G0007 Punica granatum HOM05D001332 ORTHO05D001894 3.7e-13 78.6 97 50.5
PGR119G0063 Punica granatum HOM05D001332 ORTHO05D001894 3.7e-13 78.6 97 50.5
Hma1.2p1_0227F.1_g096210 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 4.8e-13 78.2 95 49.5
RcHm_v2.0_Chr5g0068401 Rosa chinensis HOM05D001332 ORTHO05D001894 4.8e-13 78.2 99 45.5
Hund04895 Selenicereus undatus HOM05D001332 ORTHO05D001894 4.8e-13 78.2 97 49.5
Ah.08g220480 Amaranthus hybridus HOM05D001332 ORTHO05D001894 6.3e-13 77.8 99 50.5
LjContig00155g0020500 Lotus japonicus HOM05D001332 ORTHO05D001894 6.3e-13 77.8 100 53.0
MD11G1081700 Malus domestica HOM05D001332 ORTHO05D001894 6.3e-13 77.8 102 49.0
EL10Ac7g16116 Beta vulgaris HOM05D001332 ORTHO05D001894 1.1e-12 77.0 99 49.5
Prupe.6G062200 Prunus persica HOM05D001332 ORTHO05D001894 1.1e-12 77.0 96 50.0
EL10Ac7g17954 Beta vulgaris HOM05D001332 ORTHO05D001894 1.4e-12 76.6 98 50.0
Cc01_g13790 Coffea canephora HOM05D001332 ORTHO05D001894 1.4e-12 76.6 97 48.5
MD11G1081900 Malus domestica HOM05D001332 ORTHO05D001894 1.4e-12 76.6 98 50.0
FvH4_3g37990 Fragaria vesca HOM05D001332 ORTHO05D001894 4.1e-12 75.1 104 46.2
Nitab4.5_0000744g0150 Nicotiana tabacum HOM05D001332 ORTHO05D001894 4.1e-12 75.1 98 49.0
Hund04896 Selenicereus undatus HOM05D001332 ORTHO05D001894 4.1e-12 75.1 99 47.5
AUR62001693 Chenopodium quinoa HOM05D001332 ORTHO05D001894 5.3e-12 74.7 97 49.5
CARHR122930 Cardamine hirsuta HOM05D001332 ORTHO05D001894 6.9e-12 74.3 102 45.1
Glyma.02G224300 Glycine max HOM05D001332 ORTHO05D001894 9.1e-12 73.9 98 49.0
THA.LOC104800718 Tarenaya hassleriana HOM05D001332 ORTHO05D001894 9.1e-12 73.9 96 47.9
Prupe.6G061900 Prunus persica HOM05D001332 ORTHO05D001894 1.2e-11 73.6 98 48.0
Prupe.6G062000 Prunus persica HOM05D001332 ORTHO05D001894 1.2e-11 73.6 95 46.3
Oeu035008.1 Olea europaea HOM05D001332 ORTHO05D001894 1.5e-11 73.2 97 48.5
Prupe.6G062100 Prunus persica HOM05D001332 ORTHO05D001894 1.5e-11 73.2 96 49.0
Sp4g12320 Schrenkiella parvula HOM05D001332 ORTHO05D001894 1.5e-11 73.2 97 44.3
AUR62020085 Chenopodium quinoa HOM05D001332 ORTHO05D001894 2.0e-11 72.8 99 48.5
MD11G1081600 Malus domestica HOM05D001332 ORTHO05D001894 2.0e-11 72.8 97 44.3
Peaxi162Scf01058g00148 Petunia axillaris HOM05D001332 ORTHO05D001894 2.0e-11 72.8 81 49.4
MD11G1081800 Malus domestica HOM05D001332 ORTHO05D001894 2.6e-11 72.4 95 48.4
Phvul.008G263600 Phaseolus vulgaris HOM05D001332 ORTHO05D001894 3.4e-11 72.0 97 47.4
ClCG02G019730 Citrullus lanatus HOM05D001332 ORTHO05D001894 4.5e-11 71.6 95 43.2
Lj6P130T6 Lonicera japonica HOM05D001332 ORTHO05D001894 4.5e-11 71.6 98 48.0
Lj6P172T2 Lonicera japonica HOM05D001332 ORTHO05D001894 4.5e-11 71.6 98 48.0
arahy.Tifrunner.gnm1.ann1.KTFK8B Arachis hypogaea HOM05D001332 ORTHO05D001894 5.9e-11 71.2 82 51.2
Lsat_1_v5_gn_9_25641 Lactuca sativa HOM05D001332 ORTHO05D001894 5.9e-11 71.2 109 35.8
BcaB02g10265 Brassica carinata HOM05D001332 ORTHO05D001894 7.7e-11 70.9 101 44.6
FvH4_3g38000 Fragaria vesca HOM05D001332 ORTHO05D001894 7.7e-11 70.9 80 45.0
FvH4_3g38050 Fragaria vesca HOM05D001332 ORTHO05D001894 7.7e-11 70.9 80 45.0
DCAR_018943 Daucus carota HOM05D001332 ORTHO05D001894 1.0e-10 70.5 97 44.3
EL10Ac7g16117 Beta vulgaris HOM05D001332 ORTHO05D001894 1.3e-10 70.1 83 50.6
A05p15800 Brassica napus HOM05D001332 ORTHO05D001894 1.3e-10 70.1 101 43.6
BraA05t20493Z Brassica rapa HOM05D001332 ORTHO05D001894 1.3e-10 70.1 101 43.6
CsaV3_6G016430 Cucumis sativus L. HOM05D001332 ORTHO05D001894 1.3e-10 70.1 97 43.3
FAN21G1631 Fragaria x ananassa HOM05D001332 ORTHO05D001894 1.3e-10 70.1 95 44.2
Sc12g0000970 Simmondsia chinensis HOM05D001332 ORTHO05D001894 1.3e-10 70.1 107 45.8
VMungo0647G0002 Vigna mungo HOM05D001332 ORTHO05D001894 1.3e-10 70.1 91 50.5
Cpa.g.sc9.218 Carica papaya HOM05D001332 ORTHO05D001894 1.7e-10 69.7 97 46.4
FvH4_3g37970 Fragaria vesca HOM05D001332 ORTHO05D001894 2.2e-10 69.3 94 45.7
MD08G1031500 Malus domestica HOM05D001332 ORTHO05D001894 2.2e-10 69.3 97 43.3
RcHm_v2.0_Chr5g0068371 Rosa chinensis HOM05D001332 ORTHO05D001894 2.2e-10 69.3 101 42.6
AUR62001697 Chenopodium quinoa HOM05D001332 ORTHO05D001894 2.9e-10 68.9 99 46.5
Psat2g059720 Pisum sativum HOM05D001332 ORTHO05D001894 2.9e-10 68.9 100 46.0
C04p21230 Brassica napus HOM05D001332 ORTHO05D001894 3.8e-10 68.6 101 42.6
Sabra09G0029600 Salix brachista HOM05D001332 ORTHO05D001894 3.8e-10 68.6 95 46.3
arahy.Tifrunner.gnm1.ann1.SQH6NL Arachis hypogaea HOM05D001332 ORTHO05D001894 6.5e-10 67.8 82 50.0
Potri.009G042100 Populus trichocarpa HOM05D001332 ORTHO05D001894 6.5e-10 67.8 97 44.3
BolC4t23649H Brassica oleracea HOM05D001332 ORTHO05D001894 8.5e-10 67.4 101 42.6
MD03G1077300 Malus domestica HOM05D001332 ORTHO05D001894 8.5e-10 67.4 97 44.3
GSVIVG01024800001 Vitis vinifera HOM05D001332 ORTHO05D001894 1.1e-09 67.0 97 43.3
Medtr5g069640 Medicago truncatula HOM05D001332 ORTHO05D001894 1.4e-09 66.6 99 44.4
Aqoxy1G00713 Aquilegia oxysepala HOM05D001332 ORTHO05D001894 1.9e-09 66.2 108 35.2
CDE04G0966 Ceratophyllum demersum HOM05D001332 ORTHO05D001894 1.9e-09 66.2 97 42.3
AL4G24310 Arabidopsis lyrata HOM05D001332 ORTHO05D001894 2.5e-09 65.9 57 57.9
HanXRQChr08g0237251 Helianthus annuus HOM05D001332 ORTHO05D001894 2.5e-09 65.9 83 48.2
Ca_05578_v3 Cicer arietinum L. HOM05D001332 ORTHO05D001894 3.2e-09 65.5 99 45.5
Aa31LG5G6880 Aethionema arabicum HOM05D001332 ORTHO05D001894 4.2e-09 65.1 98 42.9
Aqoxy1G00712 Aquilegia oxysepala HOM05D001332 ORTHO05D001894 4.2e-09 65.1 55 56.4
Lalb_Chr04g0252391 Lupinus albus HOM05D001332 ORTHO05D001894 4.2e-09 65.1 99 42.4
MELO3C025874.2 Cucumis melo HOM05D001332 ORTHO05D001894 5.5e-09 64.7 82 43.9
AT2G29590 Arabidopsis thaliana HOM05D001332 ORTHO05D001894 7.2e-09 64.3 98 40.8
HanXRQChr15g0492661 Helianthus annuus HOM05D001332 ORTHO05D001894 7.2e-09 64.3 73 49.3
Lsat_1_v5_gn_9_25661 Lactuca sativa HOM05D001332 ORTHO05D001894 9.4e-09 63.9 110 36.4
PSO384G3494 Papaver somniferum HOM05D001332 ORTHO05D001894 9.4e-09 63.9 98 41.8
ECA247G1945 Erigeron canadensis HOM05D001332 ORTHO05D001894 1.2e-08 63.5 82 45.1
MD03G1077400 Malus domestica HOM05D001332 ORTHO05D001894 1.2e-08 63.5 92 41.3
PGSC0003DMG400030433 Solanum tuberosum HOM05D001332 ORTHO05D001894 1.2e-08 63.5 98 42.9
Nn2g11367 Nelumbo nucifera HOM05D001332 ORTHO05D001894 1.6e-08 63.2 94 43.6
Thhalv10017356m.g Eutrema salsugineum HOM05D001332 ORTHO05D001894 2.1e-08 62.8 98 40.8
TPR.G24033 Trifolium pratense HOM05D001332 ORTHO05D001894 2.1e-08 62.8 55 56.4
MSTRG.21225 Avicennia marina HOM05D001332 ORTHO05D001894 2.7e-08 62.4 101 41.6
Migut.D00863 Erythranthe guttata HOM05D001332 ORTHO05D001894 3.6e-08 62.0 100 39.0
Nitab4.5_0026685g0010 Nicotiana tabacum HOM05D001332 ORTHO05D001894 6.1e-08 61.2 60 55.0
FvH4_3g37940 Fragaria vesca HOM05D001332 ORTHO05D001894 7.9e-08 60.8 56 51.8
FAN21G2022 Fragaria x ananassa HOM05D001332 ORTHO05D001894 7.9e-08 60.8 56 51.8
Solyc06g076680.4 Solanum lycopersicum HOM05D001332 ORTHO05D001894 7.9e-08 60.8 102 39.2
Carub.0004s1065 Capsella rubella HOM05D001332 ORTHO05D001894 1.8e-07 59.7 97 40.2
Sopen06g033070 Solanum pennellii HOM05D001332 ORTHO05D001894 3.0e-07 58.9 98 39.8
Peaxi162Scf01058g00149 Petunia axillaris HOM05D001332 ORTHO05D001894 2.0e-06 56.2 70 54.3
ECA247G2268 Erigeron canadensis HOM05D001332 ORTHO05D001894 2.6e-06 55.8 52 53.8
Os02g0521700 Oryza sativa ssp. japonica HOM05D001332 ORTHO05D001894 3.3e-06 55.5 97 38.1


User provided reference genes

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