Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 7.7e-106 387.1 189 100.0
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 7.2e-88 327.4 173 88.4
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.4e-85 318.2 186 79.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.4e-85 318.2 186 79.0
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.3e-84 316.6 180 79.4
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 7.2e-80 300.8 174 77.6
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 4.0e-78 295.0 180 75.0
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.6e-74 283.1 173 74.6
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.3e-73 280.0 174 70.7
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.7e-73 279.6 174 73.0
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.3e-73 279.3 176 71.6
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.3e-73 279.3 173 71.7
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.9e-73 278.9 179 69.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.0e-73 278.1 173 72.8
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 5.0e-73 278.1 174 72.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 6.6e-73 277.7 174 73.6
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 8.6e-73 277.3 175 73.1
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.1e-72 276.9 173 70.5
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 1.1e-72 276.9 176 71.6
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.5e-72 276.6 174 71.8
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.8e-71 272.3 177 68.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.6e-71 271.9 178 71.3
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.6e-71 271.9 176 69.9
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 3.6e-71 271.9 175 72.0
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.6e-71 271.9 172 69.8
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 4.7e-71 271.6 175 71.4
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 4.7e-71 271.6 174 69.0
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 6.1e-71 271.2 172 70.3
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.0e-70 270.4 177 71.2
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.0e-70 270.4 173 71.7
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.4e-70 270.0 173 69.9
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.4e-70 270.0 178 66.9
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.8e-70 269.6 172 73.3
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 4.0e-70 268.5 174 71.8
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.2e-70 268.1 174 68.4
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.2e-69 266.9 174 69.5
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.2e-69 266.9 174 68.4
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 2.0e-69 266.2 179 68.2
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 2.6e-69 265.8 176 68.8
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.6e-69 265.8 176 68.2
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 2.6e-69 265.8 174 69.0
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.6e-69 265.8 174 68.4
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 2.6e-69 265.8 176 68.2
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 3.4e-69 265.4 173 69.4
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 3.4e-69 265.4 174 68.4
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 3.4e-69 265.4 180 67.2
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 4.4e-69 265.0 176 70.5
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 4.4e-69 265.0 178 66.3
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 4.4e-69 265.0 173 67.6
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 5.8e-69 264.6 174 67.8
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 5.8e-69 264.6 174 67.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 7.5e-69 264.2 178 66.3
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 9.8e-69 263.8 174 68.4
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.3e-68 263.5 174 68.4
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.3e-68 263.5 188 64.9
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.7e-68 263.1 173 67.6
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.2e-68 262.7 175 69.1
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 3.7e-68 261.9 179 68.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 8.3e-68 260.8 175 67.4
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.1e-67 260.4 176 67.0
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.1e-67 260.4 176 67.6
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.1e-67 260.4 173 69.4
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.1e-67 260.4 173 68.8
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.2e-67 258.8 174 65.5
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 4.1e-67 258.5 174 67.2
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 4.1e-67 258.5 176 68.2
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 7.0e-67 257.7 173 67.1
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.2e-66 256.9 177 65.0
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 2.0e-66 256.1 176 67.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.0e-66 256.1 180 63.9
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.7e-66 255.8 175 64.6
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 2.7e-66 255.8 180 63.3
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.5e-66 255.4 175 66.3
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 4.6e-66 255.0 174 67.8
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.0e-65 253.8 183 64.5
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.0e-65 253.8 173 67.6
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 5.0e-65 251.5 174 66.7
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 8.6e-65 250.8 171 65.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-64 250.0 176 64.8
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.9e-64 249.6 174 64.9
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 1.6e-63 246.5 153 71.9
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.6e-63 246.5 174 64.4
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.6e-63 246.5 174 64.4
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 2.1e-63 246.1 177 62.7
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 8.0e-63 244.2 162 68.5
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.8e-62 243.0 161 67.1
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.8e-62 243.0 162 67.9
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 7.5e-61 237.7 152 69.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.2e-60 236.1 172 60.5
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.1e-59 233.8 177 58.2
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.4e-59 232.6 147 69.4
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 3.2e-59 232.3 175 61.1
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.1e-59 231.9 151 68.2
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 7.0e-59 231.1 172 62.2
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.7e-58 229.2 168 62.5
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.3e-57 226.9 175 58.9
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 3.9e-57 225.3 162 63.6
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.9e-57 225.3 152 64.5
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.3e-56 221.9 181 56.9
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 2.8e-55 219.2 163 61.3
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.6e-55 218.8 149 65.1
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 2.3e-54 216.1 173 60.1
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 1.6e-50 203.4 169 57.4
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 7.8e-50 201.1 155 57.4
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 4.4e-45 185.3 177 49.7
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 4.4e-45 185.3 182 48.4
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.8e-45 184.9 128 63.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.7e-44 183.3 175 48.0
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 6.0e-42 174.9 138 58.7
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.1e-40 170.6 179 48.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 4.7e-39 165.2 123 61.0
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 4.6e-34 148.7 176 42.0
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 6.4e-28 128.3 136 49.3
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.0e-21 106.7 173 34.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 4.9e-20 102.1 153 41.2
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.9e-19 100.1 164 41.5
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 2.5e-19 99.8 66 69.7
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.6e-15 87.0 59 61.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.8e-14 83.6 93 47.3
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 6.3e-07 58.5 179 26.8
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 6.3e-07 58.5 179 26.8
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 6.3e-07 58.5 173 28.3
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.4e-06 57.4 172 27.9
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.4e-06 57.4 174 28.7
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.8e-06 57.0 172 27.9
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 2.4e-06 56.6 179 26.3
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 2.4e-06 56.6 179 26.3
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 2.4e-06 56.6 179 26.3
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.4e-06 56.6 177 27.1
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.4e-06 56.6 172 27.9
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.1e-06 56.2 174 28.2
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 3.1e-06 56.2 177 27.7
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 5.3e-06 55.5 174 28.2
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 6.9e-06 55.1 176 26.7
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 9.0e-06 54.7 177 27.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 9.0e-06 54.7 180 27.2
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 9.0e-06 54.7 178 28.1


User provided reference genes

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