Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 1.1e-90 336.7 173 100.0
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 9.3e-74 280.4 220 69.5
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.5e-68 263.1 173 77.5
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.5e-68 263.1 173 77.5
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 6.4e-67 257.7 168 78.6
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 3.2e-66 255.4 166 75.3
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 7.1e-66 254.2 173 75.7
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.0e-64 250.4 159 79.9
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.0e-64 250.4 173 74.6
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 1.8e-64 249.6 164 75.6
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 3.9e-64 248.4 162 75.3
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 6.7e-64 247.7 160 73.8
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 1.5e-63 246.5 167 73.7
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 4.3e-63 245.0 171 73.1
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 2.1e-62 242.7 174 71.8
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 8.1e-62 240.7 170 71.8
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 1.1e-61 240.4 173 69.9
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 1.1e-61 240.4 173 69.9
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 4.0e-61 238.4 171 71.3
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 4.0e-61 238.4 174 71.3
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 6.9e-61 237.7 159 77.4
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 9.0e-61 237.3 161 73.9
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 9.0e-61 237.3 160 70.6
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 1.2e-60 236.9 163 70.6
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 1.2e-60 236.9 163 70.6
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.2e-60 236.9 170 70.6
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.5e-60 236.5 170 70.6
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 2.6e-60 235.7 163 69.9
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 2.6e-60 235.7 163 69.9
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 3.4e-60 235.3 164 68.3
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 4.5e-60 235.0 172 69.2
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 4.5e-60 235.0 163 69.9
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 5.8e-60 234.6 165 72.7
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 7.6e-60 234.2 161 73.3
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 7.6e-60 234.2 160 71.9
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 1.0e-59 233.8 163 68.7
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 1.0e-59 233.8 163 68.7
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 1.0e-59 233.8 163 68.7
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.0e-59 233.8 168 73.8
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.0e-59 233.8 159 69.8
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 1.3e-59 233.4 171 69.6
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 1.7e-59 233.0 172 72.1
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 1.7e-59 233.0 153 73.2
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.2e-59 232.6 166 67.5
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 2.9e-59 232.3 168 72.0
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 2.9e-59 232.3 171 71.3
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 3.8e-59 231.9 171 70.2
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 3.8e-59 231.9 173 65.3
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 4.9e-59 231.5 166 66.9
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.9e-59 231.5 166 66.9
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.9e-59 231.5 166 66.9
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.9e-59 231.5 169 72.8
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.1e-58 230.3 163 68.1
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.1e-58 230.3 163 68.1
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 1.1e-58 230.3 171 65.5
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-58 230.3 169 72.2
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.4e-58 229.9 166 73.5
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 1.4e-58 229.9 163 68.7
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.4e-58 229.9 169 71.0
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 1.9e-58 229.6 169 71.0
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 1.9e-58 229.6 169 71.0
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 4.2e-58 228.4 164 70.7
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 7.1e-58 227.6 173 64.7
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 9.3e-58 227.3 170 64.7
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 9.3e-58 227.3 170 64.7
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 9.3e-58 227.3 173 70.5
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 9.3e-58 227.3 158 73.4
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 1.2e-57 226.9 164 66.5
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.6e-57 226.5 170 67.1
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 2.1e-57 226.1 173 68.8
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 2.1e-57 226.1 168 66.7
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.7e-57 225.7 168 66.7
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 3.5e-57 225.3 164 67.7
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 3.5e-57 225.3 173 65.3
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 4.6e-57 224.9 159 71.7
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.0e-57 224.6 143 72.0
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 6.0e-57 224.6 161 70.2
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 6.0e-57 224.6 175 68.0
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 6.0e-57 224.6 165 71.5
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 1.0e-56 223.8 156 71.2
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.3e-56 223.4 159 71.1
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.8e-56 223.0 162 70.4
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.8e-56 223.0 157 71.3
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 3.9e-56 221.9 169 63.9
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 3.9e-56 221.9 143 76.9
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 3.9e-56 221.9 164 67.1
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 6.7e-56 221.1 171 63.7
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 8.7e-56 220.7 161 69.6
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 1.1e-55 220.3 166 67.5
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 1.9e-55 219.5 172 62.2
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 3.3e-55 218.8 168 64.9
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 5.7e-55 218.0 165 69.7
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 9.6e-55 217.2 149 73.2
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 1.3e-54 216.9 159 71.1
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 2.1e-54 216.1 164 65.2
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 6.2e-54 214.5 173 67.1
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.4e-53 213.4 164 65.9
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.2e-52 210.3 178 64.0
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 7.6e-52 207.6 168 64.9
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.0e-51 207.2 163 66.3
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 2.2e-51 206.1 137 75.2
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 6.5e-51 204.5 178 67.4
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 6.5e-51 204.5 163 65.0
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.1e-49 199.5 118 82.2
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 8.7e-48 194.1 133 75.2
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 4.3e-47 191.8 162 57.4
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 1.3e-46 190.3 145 71.0
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.2e-46 189.5 144 66.0
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.4e-45 186.0 129 74.4
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 2.4e-45 186.0 166 57.2
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 1.5e-44 183.3 161 59.6
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 2.0e-44 183.0 154 64.9
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 2.6e-44 182.6 135 70.4
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 1.0e-43 180.6 142 69.0
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 6.5e-43 177.9 141 67.4
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 6.5e-43 177.9 141 67.4
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.2e-42 175.3 125 72.0
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 7.2e-42 174.5 140 66.4
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 9.4e-42 174.1 145 65.5
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 2.1e-41 172.9 159 56.0
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 3.6e-41 172.2 143 60.1
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 6.1e-41 171.4 145 64.1
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 7.9e-41 171.0 164 59.8
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 8.8e-40 167.5 107 74.8
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 6.3e-38 161.4 131 64.9
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 4.2e-34 148.7 96 72.9
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.4e-34 147.5 148 60.8
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.4e-34 147.5 148 60.8
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.6e-33 146.7 96 71.9
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 2.7e-33 146.0 81 86.4
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 1.8e-32 143.3 115 59.1
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 8.8e-32 141.0 168 44.0
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.1e-31 140.6 88 75.0
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 5.7e-31 138.3 95 71.6
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 5.3e-29 131.7 149 53.0
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 2.0e-28 129.8 151 47.0
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 4.0e-24 115.5 145 42.1
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 4.0e-24 115.5 109 59.6
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 6.7e-24 114.8 67 83.6
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 2.0e-23 113.2 147 39.5
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 4.1e-21 105.5 140 39.3
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 1.0e-19 100.9 79 64.6
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-18 97.4 87 58.6
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 3.0e-08 62.8 75 54.7
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 6.8e-08 61.6 85 43.5
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 3.4e-07 59.3 49 57.1
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 5.7e-07 58.5 53 62.3
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 5.7e-07 58.5 40 70.0
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 7.5e-07 58.2 28 89.3
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 7.5e-07 58.2 29 89.7
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 7.5e-07 58.2 67 43.3
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 1.7e-06 57.0 34 79.4
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 1.7e-06 57.0 69 43.5
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 2.2e-06 56.6 29 86.2
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 2.8e-06 56.2 102 34.3
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 4.9e-06 55.5 102 34.3
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 6.3e-06 55.1 67 41.8
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 8.3e-06 54.7 66 42.4


User provided reference genes

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