Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 2.0e-130 469.2 240 100.0
RhsimUnG0193600 Rhododendron simsii HOM05D000080 ORTHO05D001194 6.0e-31 138.7 86 83.7
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 8.7e-30 134.8 159 61.6
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.1e-19 101.3 105 54.3
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 3.1e-19 99.8 126 55.6
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 6.9e-19 98.6 125 54.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-18 97.8 126 47.6
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 2.6e-18 96.7 123 48.0
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 4.5e-18 95.9 105 57.1
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.5e-18 95.9 123 55.3
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.5e-18 95.9 123 55.3
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 1.0e-17 94.7 127 46.5
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 1.3e-17 94.4 134 47.0
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 5.0e-17 92.4 106 54.7
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.0e-17 92.4 121 47.9
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.0e-17 92.4 123 47.2
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 8.5e-17 91.7 130 50.8
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.5e-17 91.7 112 50.0
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 8.5e-17 91.7 121 47.9
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 8.5e-17 91.7 122 47.5
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 1.1e-16 91.3 112 50.0
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.1e-16 91.3 121 47.1
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.4e-16 90.9 120 46.7
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.4e-16 90.9 119 47.9
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 1.4e-16 90.9 127 47.2
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.4e-16 90.9 128 46.1
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.9e-16 90.5 112 50.0
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.5e-16 90.1 112 50.0
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 3.2e-16 89.7 118 48.3
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 4.2e-16 89.4 121 47.9
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.2e-16 89.4 123 49.6
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 5.5e-16 89.0 109 52.3
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 5.5e-16 89.0 123 43.1
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 9.4e-16 88.2 124 48.4
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 1.2e-15 87.8 124 45.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-15 87.8 125 45.6
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.6e-15 87.4 118 47.5
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 2.1e-15 87.0 126 45.2
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.1e-15 87.0 107 50.5
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 2.1e-15 87.0 126 45.2
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.1e-15 87.0 123 48.8
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.7e-15 86.7 135 44.4
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 4.7e-15 85.9 123 44.7
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 4.7e-15 85.9 113 50.4
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 6.1e-15 85.5 107 47.7
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 7.9e-15 85.1 99 54.5
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.0e-14 84.7 123 46.3
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.0e-14 84.7 103 49.5
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.0e-14 84.7 114 46.5
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.0e-14 84.7 109 47.7
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.4e-14 84.3 130 46.2
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.4e-14 84.3 116 49.1
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.4e-14 84.3 111 45.0
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 5.1e-14 82.4 123 43.1
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 5.1e-14 82.4 129 45.7
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 6.7e-14 82.0 105 48.6
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 8.8e-14 81.6 123 43.9
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.8e-14 81.6 113 46.0
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 8.8e-14 81.6 138 40.6
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 8.8e-14 81.6 93 50.5
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 8.8e-14 81.6 130 43.1
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.1e-13 81.3 135 41.5
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 1.5e-13 80.9 105 44.8
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 2.6e-13 80.1 124 39.5
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.3e-13 79.7 124 46.8
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 4.4e-13 79.3 120 44.2
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 4.4e-13 79.3 123 41.5
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 5.7e-13 79.0 120 42.5
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 5.7e-13 79.0 134 43.3
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 9.7e-13 78.2 111 42.3
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.3e-12 77.8 128 46.1
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.7e-12 77.4 130 43.8
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.7e-12 77.4 116 45.7
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.7e-12 77.4 116 45.7
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 1.7e-12 77.4 122 44.3
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.7e-12 77.4 126 40.5
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.8e-12 76.6 113 45.1
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 4.8e-12 75.9 122 42.6
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.3e-12 75.5 126 38.9
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.3e-12 75.5 126 38.9
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 6.3e-12 75.5 108 45.4
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 6.3e-12 75.5 115 41.7
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 1.1e-11 74.7 103 45.6
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 1.1e-11 74.7 106 46.2
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 2.4e-11 73.6 93 47.3
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 3.1e-11 73.2 96 50.0
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 4.1e-11 72.8 105 43.8
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 4.1e-11 72.8 94 51.1
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 5.3e-11 72.4 115 43.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.9e-11 72.0 113 43.4
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.2e-10 71.2 119 42.0
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 1.2e-10 71.2 129 42.6
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-10 70.9 129 38.0
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.0e-10 70.5 129 38.0
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 2.6e-10 70.1 125 41.6
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.9e-10 68.9 102 44.1
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 7.7e-10 68.6 116 42.2
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 7.7e-10 68.6 105 44.8
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 1.0e-09 68.2 124 37.9
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.0e-09 68.2 123 42.3
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 1.3e-09 67.8 122 39.3
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 1.3e-09 67.8 133 38.3
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.2e-09 67.0 115 42.6
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.9e-09 66.6 111 42.3
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.5e-09 65.5 113 41.6
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 6.5e-09 65.5 108 38.0
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 8.5e-09 65.1 117 36.8
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 1.1e-08 64.7 127 40.2
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 1.9e-08 63.9 103 39.8
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 1.9e-08 63.9 118 46.6
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.5e-08 63.5 83 54.2
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.5e-08 63.5 120 37.5
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 3.2e-08 63.2 131 38.9
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.2e-08 63.2 115 39.1
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 3.2e-08 63.2 105 41.0
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 5.5e-08 62.4 102 39.2
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 5.5e-08 62.4 103 38.8
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 7.2e-08 62.0 103 40.8
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 9.4e-08 61.6 125 37.6
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 1.2e-07 61.2 121 38.8
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 3.6e-07 59.7 109 44.0
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 3.6e-07 59.7 109 44.0
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 4.7e-07 59.3 114 39.5
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 4.7e-07 59.3 114 39.5
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 1.0e-06 58.2 123 35.8
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 1.4e-06 57.8 107 41.1
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.8e-06 57.4 123 39.0
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 3.0e-06 56.6 106 42.5
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 3.9e-06 56.2 116 37.1
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 6.7e-06 55.5 123 35.8
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 6.7e-06 55.5 123 39.0
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 8.8e-06 55.1 106 40.6


User provided reference genes

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