Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 2.5e-237 825.1 427 100.0
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 4.2e-184 648.3 432 79.4
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 2.5e-165 585.9 388 80.4
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 7.7e-162 574.3 385 78.4
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.3e-161 573.5 385 78.2
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 1.7e-161 573.2 386 77.5
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 2.6e-154 549.3 377 75.6
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.5e-149 533.5 380 73.9
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 2.6e-149 532.7 386 74.6
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.3e-148 530.4 391 74.2
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 3.7e-148 528.9 385 74.3
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 6.3e-148 528.1 380 73.7
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 2.4e-147 526.2 345 77.7
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 5.3e-147 525.0 381 74.5
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.6e-146 523.5 360 75.3
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.6e-146 523.5 380 72.9
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 2.0e-146 523.1 353 77.6
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 2.0e-146 523.1 378 74.6
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 2.0e-146 523.1 373 73.5
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 3.5e-146 522.3 386 72.8
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 3.5e-146 522.3 340 77.6
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 5.9e-146 521.5 377 73.7
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 7.7e-146 521.2 382 73.3
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 6.5e-145 518.1 373 73.7
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 6.5e-145 518.1 335 80.0
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 2.5e-144 516.2 333 80.2
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 3.2e-144 515.8 364 73.4
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 5.5e-144 515.0 382 70.7
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 5.5e-144 515.0 388 71.9
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.2e-143 513.8 382 70.7
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.6e-143 513.5 405 67.4
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 2.7e-143 512.7 373 73.2
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 2.7e-143 512.7 383 69.2
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 3.6e-143 512.3 346 75.1
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 6.1e-143 511.5 342 75.7
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 1.0e-142 510.8 357 76.5
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.8e-142 510.0 346 75.7
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.8e-142 510.0 346 74.9
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 2.3e-142 509.6 346 75.7
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 5.2e-142 508.4 331 78.2
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 6.7e-142 508.1 379 71.0
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.5e-141 506.9 370 71.1
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.5e-141 506.9 398 70.4
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 5.7e-141 505.0 364 72.0
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 7.5e-141 504.6 395 68.9
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 7.5e-141 504.6 376 70.2
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 1.3e-140 503.8 386 70.7
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 1.3e-140 503.8 361 72.9
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 2.2e-140 503.1 347 74.6
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 2.8e-140 502.7 364 71.7
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 2.8e-140 502.7 379 71.0
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 4.8e-140 501.9 346 74.0
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 4.8e-140 501.9 379 71.2
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 6.3e-140 501.5 382 69.1
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 6.3e-140 501.5 382 69.1
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 6.3e-140 501.5 390 68.5
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 8.2e-140 501.1 382 69.1
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 8.2e-140 501.1 379 70.7
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 2.4e-139 499.6 401 69.3
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.1e-139 499.2 391 69.3
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 9.1e-139 497.7 353 74.5
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 1.2e-138 497.3 361 73.4
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.6e-138 496.9 361 72.9
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.6e-138 496.9 361 72.9
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 4.5e-138 495.4 335 77.0
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.3e-137 493.8 331 77.0
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 3.2e-136 489.2 360 72.8
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 4.2e-136 488.8 335 76.1
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 9.4e-136 487.6 395 67.8
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 6.1e-135 485.0 313 81.2
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.0e-134 484.2 383 68.9
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 1.4e-134 483.8 384 69.5
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 1.4e-134 483.8 369 69.6
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.2e-133 480.7 387 68.5
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.5e-133 480.3 350 72.6
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.5e-133 480.3 303 79.5
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 2.7e-130 469.5 343 71.7
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 2.7e-130 469.5 366 69.9
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.1e-128 464.2 355 70.1
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 4.2e-128 462.2 363 69.4
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 4.2e-128 462.2 282 83.0
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 7.2e-128 461.5 335 72.2
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.6e-127 460.3 351 70.9
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.8e-126 456.8 298 76.8
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 9.8e-125 451.1 359 66.0
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 1.3e-124 450.7 328 72.0
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.7e-124 450.3 304 74.0
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 3.7e-124 449.1 281 81.5
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 4.9e-124 448.7 323 71.2
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.4e-123 447.2 337 69.1
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 4.1e-123 445.7 303 77.9
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 3.7e-116 422.5 420 58.3
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 2.7e-114 416.4 285 73.7
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 1.3e-105 387.5 370 58.6
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.9e-96 357.1 310 61.0
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.7e-92 344.0 225 77.8
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 9.3e-83 311.6 234 70.5
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 6.0e-82 308.9 296 58.1
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.9e-80 303.9 433 47.1
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.4e-75 287.7 186 77.4
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 1.2e-74 284.6 312 47.1
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 6.7e-73 278.9 295 57.6
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 3.3e-72 276.6 320 47.2
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 4.8e-71 272.7 306 47.7
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.6e-69 266.9 232 57.8
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.6e-69 266.9 282 56.4
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.0e-65 255.0 891 28.2
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.2e-61 241.5 451 38.8
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.2e-58 231.5 143 81.1
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.7e-55 219.9 141 77.3
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 5.0e-44 183.0 123 78.9
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 1.8e-41 174.5 124 71.8
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 7.7e-37 159.1 102 79.4
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 1.5e-35 154.8 177 50.3
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 8.8e-33 145.6 325 33.2
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.1e-22 112.1 82 69.5
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.8e-14 84.7 79 62.0
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 2.4e-14 84.3 260 28.8
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 2.7e-13 80.9 48 81.2
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 3.5e-13 80.5 46 84.8
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 4.5e-13 80.1 276 29.7
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 1.5e-11 75.1 49 69.4
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 3.6e-10 70.5 72 59.7


User provided reference genes

Program Settings