Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0050100 Rhododendron simsii HOM05D008810 ORTHO05D010971 1.7e-229 800.0 861 100.0
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 4.8e-187 659.1 857 86.3
CSS0037385 Camellia sinensis var. sinensis HOM05D008810 ORTHO05D010971 1.0e-96 359.0 756 82.5
MSTRG.12764 Avicennia marina HOM05D008810 ORTHO05D010971 6.2e-70 270.0 863 65.2
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 3.1e-69 267.7 862 65.9
Actinidia23380 Actinidia chinensis HOM05D008810 ORTHO05D010971 2.6e-68 264.6 195 67.7
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 6.7e-64 250.0 254 52.0
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 1.9e-63 248.4 865 63.7
Dinv19149 Davidia involucrata HOM05D008810 ORTHO05D010971 2.8e-62 244.6 195 62.1
Dinv28839 Davidia involucrata HOM05D008810 ORTHO05D010971 2.8e-62 244.6 195 62.1
Ciclev10018778m.g Citrus clementina HOM05D008810 ORTHO05D010971 1.1e-61 242.7 259 49.0
Cpa.g.sc8.119 Carica papaya HOM05D008810 ORTHO05D010971 1.4e-61 242.3 252 51.6
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 1.4e-61 242.3 259 54.8
Lsat_1_v5_gn_9_17361 Lactuca sativa HOM05D008810 ORTHO05D010971 6.9e-61 240.0 258 48.8
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 5.9e-60 236.9 258 48.4
Duzib138G0800 Durio zibethinus HOM05D008810 ORTHO05D010971 7.6e-60 236.5 255 49.8
HanXRQChr08g0232341 Helianthus annuus HOM05D008810 ORTHO05D010971 1.3e-59 235.7 856 66.2
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 8.4e-59 233.0 257 49.0
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 1.2e-57 229.2 257 48.2
THA.LOC104802656 Tarenaya hassleriana HOM05D008810 ORTHO05D010971 1.2e-57 229.2 257 47.5
Thecc.01G216300 Theobroma cacao HOM05D008810 ORTHO05D010971 2.7e-57 228.0 256 47.7
Migut.N00641 Erythranthe guttata HOM05D008810 ORTHO05D010971 3.9e-56 224.2 260 45.8
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 1.5e-55 222.2 257 46.7
Sp3g06240 Schrenkiella parvula HOM05D008810 ORTHO05D010971 6.3e-54 216.9 253 46.6
AL3G18590 Arabidopsis lyrata HOM05D008810 ORTHO05D010971 2.0e-52 211.8 255 45.9
AT3G07290 Arabidopsis thaliana HOM05D008810 ORTHO05D010971 7.7e-52 209.9 255 46.3
CARHR081940 Cardamine hirsuta HOM05D008810 ORTHO05D010971 9.4e-50 203.0 232 47.4
SGA_v2.0_scaffold77G25274 Striga asiatica HOM05D008810 ORTHO05D010971 5.1e-48 197.2 259 43.6
Aa31LG5G17860 Aethionema arabicum HOM05D008810 ORTHO05D010971 2.5e-47 194.9 256 42.2
BraA01t04388Z Brassica rapa HOM05D008810 ORTHO05D010971 9.7e-47 193.0 253 42.7
BNapus_Darmor_BZH_scaffold_109p00140 Brassica napus HOM05D008810 ORTHO05D010971 2.8e-46 191.4 253 41.9
BcaB04g21297 Brassica carinata HOM05D008810 ORTHO05D010971 3.7e-46 191.0 252 42.5
BolC1t05560H Brassica oleracea HOM05D008810 ORTHO05D010971 3.1e-45 188.0 248 41.9
Aqoxy2G03931 Aquilegia oxysepala HOM05D008810 ORTHO05D010971 9.1e-45 186.4 235 58.7
ATR0661G545 Amborella trichopoda HOM05D008810 ORTHO05D010971 4.1e-37 161.0 227 51.5
MBI11_g07406_MAGBIO Magnolia biondii HOM05D008810 ORTHO05D010971 1.6e-36 159.1 156 54.5
Carub.0003s0683 Capsella rubella HOM05D008810 ORTHO05D010971 5.9e-36 157.1 154 53.2
Gohir.A07G161900 Gossypium hirsutum HOM05D008810 ORTHO05D010971 4.8e-30 137.5 178 41.0
ECA247G3188 Erigeron canadensis HOM05D008810 ORTHO05D010971 1.7e-27 129.0 168 43.5
Carub.0003s0682 Capsella rubella HOM05D008810 ORTHO05D010971 5.5e-18 97.4 177 31.1
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 9.8e-15 86.7 152 34.2
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.8e-13 82.4 151 32.5
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 7.7e-12 77.0 149 30.2
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.3e-11 76.3 154 33.1
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 1.7e-11 75.9 152 29.6
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 1.7e-11 75.9 153 31.4
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 6.6e-11 73.9 151 27.8
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 1.1e-10 73.2 147 30.6
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.1e-10 73.2 149 30.9
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 2.5e-10 72.0 162 28.4
Oeu033330.1 Olea europaea HOM05D008810 ORTHO05D010971 1.2e-09 69.7 76 43.4
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.6e-09 69.3 149 30.9
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 1.6e-09 69.3 148 31.1
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.6e-09 69.3 156 30.8
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 2.8e-09 68.6 149 29.5
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 3.6e-09 68.2 154 29.2
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 4.7e-09 67.8 228 26.3
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 4.7e-09 67.8 150 26.0
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 8.0e-09 67.0 152 29.6
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 1.0e-08 66.6 135 32.6
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 1.0e-08 66.6 149 27.5
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.4e-08 66.2 153 29.4
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 4.0e-08 64.7 150 30.0
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 5.2e-08 64.3 155 23.2
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 5.2e-08 64.3 135 31.9
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 5.2e-08 64.3 147 27.2
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 8.9e-08 63.5 240 22.1
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 1.5e-07 62.8 162 25.9
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 2.0e-07 62.4 151 27.2
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.0e-07 62.4 157 26.8
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 2.6e-07 62.0 263 21.3
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 3.4e-07 61.6 151 29.1
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.4e-07 61.6 167 27.5
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.3e-06 59.7 151 26.5
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.3e-06 59.7 116 26.7
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 1.3e-06 59.7 155 26.5
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.2e-06 58.9 167 26.9
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 2.2e-06 58.9 127 31.5
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 2.2e-06 58.9 171 28.1
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 2.9e-06 58.5 159 26.4
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 6.4e-06 57.4 149 28.2


User provided reference genes

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