Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 0.0e+00 1077.0 554 100.0
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 5.5e-269 930.6 605 81.0
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 4.7e-252 874.4 559 82.6
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 8.8e-243 843.6 558 79.0
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.6e-239 832.8 558 78.9
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.8e-233 812.0 562 77.0
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.4e-224 781.2 521 80.0
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.8e-220 768.8 559 72.6
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 9.8e-218 760.4 559 72.5
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.3e-217 760.0 558 72.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.1e-216 756.9 561 72.5
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 5.9e-215 751.1 570 71.8
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.3e-214 750.0 559 72.3
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 2.9e-214 748.8 559 72.8
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.1e-213 746.9 557 70.6
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.5e-213 745.7 559 71.2
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.5e-213 745.7 556 70.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.3e-213 745.0 557 70.4
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.0e-211 740.3 558 71.0
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.4e-211 740.0 559 72.3
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.8e-211 739.6 560 72.1
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.0e-210 736.1 557 70.0
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 3.4e-210 735.3 559 70.1
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.8e-210 734.6 560 70.9
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-209 733.4 561 70.6
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.7e-209 733.0 561 69.9
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.9e-209 731.5 560 71.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.9e-206 721.8 562 70.1
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.9e-205 719.5 559 70.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.1e-203 713.8 558 68.3
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 4.0e-203 711.8 562 69.8
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 4.4e-202 708.4 559 70.3
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 5.8e-202 708.0 559 69.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 6.4e-201 704.5 563 68.0
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.4e-200 703.4 558 67.7
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.4e-200 703.4 563 68.4
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.4e-200 702.6 559 67.3
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.6e-198 694.1 566 67.3
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.6e-196 689.9 560 66.4
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.8e-196 689.1 556 66.2
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.8e-196 689.1 560 66.2
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 6.8e-195 684.5 564 67.0
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 6.4e-193 677.9 639 61.3
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.9e-192 676.4 560 66.4
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 2.4e-192 676.0 560 66.4
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 7.1e-192 674.5 556 64.7
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 4.6e-191 671.8 556 65.1
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 6.0e-191 671.4 618 63.4
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.3e-190 669.5 558 66.3
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 3.0e-190 669.1 563 63.8
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 3.9e-190 668.7 560 66.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.9e-190 668.7 556 64.9
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.1e-189 667.2 558 63.8
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.1e-189 667.2 546 68.7
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.9e-189 666.4 562 67.6
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.9e-189 666.4 575 63.3
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.4e-187 660.2 556 64.2
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.0e-187 658.7 564 65.2
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 5.2e-187 658.3 560 67.3
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.0e-186 656.4 561 65.6
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.9e-185 651.7 561 65.4
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 4.2e-184 648.7 556 66.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 3.0e-182 642.5 546 65.4
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.9e-182 642.1 564 64.9
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 5.1e-182 641.7 570 63.5
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 8.7e-182 641.0 556 66.2
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-181 640.6 696 54.3
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 4.3e-181 638.6 556 64.4
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.2e-180 637.1 570 63.3
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 3.6e-180 635.6 558 63.4
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 5.3e-179 631.7 536 64.4
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.3e-179 631.7 695 54.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 4.4e-178 628.6 565 63.7
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 6.4e-177 624.8 590 59.7
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.4e-176 621.7 579 60.6
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 2.1e-175 619.8 472 69.9
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 6.0e-175 618.2 579 60.4
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 7.3e-173 611.3 569 61.0
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.4e-171 606.3 573 60.6
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.4e-168 596.3 472 65.5
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 7.1e-168 594.7 641 54.4
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 9.3e-168 594.3 584 57.4
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.5e-167 592.4 529 63.3
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.8e-166 590.1 567 60.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.3e-166 589.7 454 69.4
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 9.6e-165 584.3 567 59.3
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 4.0e-163 578.9 572 57.9
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 3.4e-162 575.9 570 58.9
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 4.5e-162 575.5 571 58.8
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 4.5e-162 575.5 577 58.1
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.2e-161 573.2 571 57.4
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.9e-160 570.1 571 57.3
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.5e-160 569.7 573 57.6
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.5e-160 568.5 577 59.3
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.1e-159 566.6 570 60.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 2.5e-157 559.7 572 57.0
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 9.0e-155 551.2 559 57.8
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 6.0e-151 538.5 565 56.6
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.8e-150 537.0 538 57.8
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.5e-149 533.1 562 55.9
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-147 527.7 577 56.5
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.8e-147 526.9 577 56.5
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.8e-147 526.9 577 56.5
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.2e-145 520.0 576 54.7
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.1e-144 517.7 576 54.5
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 6.3e-140 501.9 420 66.0
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.9e-134 482.6 576 53.3
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.6e-133 479.9 433 64.2
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.9e-128 463.8 583 49.7
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.2e-128 463.0 564 50.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 7.4e-125 451.8 567 49.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.7e-124 450.7 566 49.3
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 4.1e-115 419.5 560 47.0
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.2e-114 417.9 396 60.1
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.1e-96 358.2 568 41.7
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.6e-95 354.4 552 42.8
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 4.4e-93 346.3 322 60.9
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 7.8e-82 308.9 498 42.4
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 7.3e-80 302.4 308 57.8
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.4e-70 270.8 358 45.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.7e-50 204.1 254 44.9
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.8e-47 194.1 386 36.8
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.4e-38 165.2 161 58.4
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 8.5e-28 129.4 90 75.6
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.5e-24 118.6 87 71.3
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.3e-23 115.5 125 54.4
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.7e-20 105.1 84 65.5
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.0e-17 94.4 75 65.3
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.7e-15 87.4 176 30.7
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 8.2e-15 86.3 190 36.3
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 8.2e-15 86.3 218 31.2
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.4e-14 85.5 205 30.7
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.6e-13 81.3 180 32.2
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 7.2e-11 73.2 60 68.3
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 2.8e-07 61.2 49 63.3


User provided reference genes

Program Settings