Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.9e-164 582.8 383 100.0
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 5.7e-92 342.0 391 74.4
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 1.6e-57 227.6 304 53.6
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.3e-56 224.6 311 54.3
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 2.4e-45 187.2 310 47.7
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 9.0e-45 185.3 305 47.9
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 2.9e-43 180.3 303 43.6
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.1e-42 178.3 307 45.0
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 4.6e-41 172.9 306 45.1
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.7e-40 168.7 315 45.4
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 3.7e-38 163.3 298 43.3
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 4.8e-38 162.9 295 46.8
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 8.1e-38 162.2 296 46.3
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.1e-37 161.8 307 43.0
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 3.1e-37 160.2 313 43.8
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 2.6e-36 157.1 306 44.1
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 4.5e-36 156.4 292 42.8
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.2e-35 154.1 310 44.8
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.9e-35 153.7 307 42.0
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 3.8e-35 153.3 295 45.4
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 3.8e-35 153.3 299 41.5
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 4.9e-35 152.9 307 41.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.9e-34 151.0 298 43.0
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 2.5e-34 150.6 295 45.4
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 3.2e-34 150.2 310 39.4
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 4.2e-34 149.8 310 40.3
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.6e-33 147.9 303 40.6
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 2.1e-33 147.5 314 43.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.7e-33 147.1 298 42.6
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.7e-33 147.1 310 39.0
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 4.6e-33 146.4 293 42.7
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 6.0e-33 146.0 295 42.4
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 7.9e-33 145.6 309 41.1
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 1.3e-32 144.8 306 43.1
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.3e-32 144.8 295 42.0
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.8e-32 144.4 305 39.7
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.0e-32 143.7 297 41.4
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 3.9e-32 143.3 304 42.4
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 6.7e-32 142.5 298 42.3
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 3.3e-31 140.2 314 37.6
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 3.3e-31 140.2 293 42.3
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 7.4e-31 139.0 306 41.5
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 7.4e-31 139.0 308 39.0
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 7.4e-31 139.0 299 41.1
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 2.1e-30 137.5 313 41.2
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 2.1e-30 137.5 317 39.1
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 2.8e-30 137.1 294 40.5
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 1.1e-29 135.2 304 40.1
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.1e-29 135.2 297 41.4
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 1.4e-29 134.8 308 39.0
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 2.4e-29 134.0 296 41.9
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 2.4e-29 134.0 300 40.0
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 9.0e-29 132.1 296 43.6
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 9.0e-29 132.1 296 43.6
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.2e-28 131.7 296 39.2
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.0e-28 131.0 309 39.2
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 7.6e-28 129.0 292 39.7
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 7.6e-28 129.0 278 38.8
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 1.0e-27 128.6 294 42.2
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.9e-27 127.1 293 41.6
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 5.0e-27 126.3 254 40.6
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.0e-27 126.3 299 34.1
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 5.0e-27 126.3 301 38.5
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.1e-26 125.2 300 41.0
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 1.4e-26 124.8 313 40.6
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.4e-26 124.8 305 39.7
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 3.2e-26 123.6 321 35.2
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.2e-25 121.7 297 40.4
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 2.1e-25 120.9 299 36.5
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 3.0e-24 117.1 305 38.0
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 3.0e-24 117.1 298 39.3
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.9e-24 116.7 311 39.9
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.9e-23 114.4 309 39.8
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 9.7e-23 112.1 300 38.3
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 1.3e-22 111.7 306 42.2
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.9e-21 105.9 226 36.3
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 6.9e-21 105.9 237 35.4
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.9e-19 100.5 304 35.2
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 6.5e-19 99.4 295 33.9
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 1.1e-18 98.6 294 36.7
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.4e-18 98.2 292 34.6
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.1e-17 94.4 309 35.6
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 2.7e-17 94.0 314 33.8
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 3.6e-17 93.6 308 35.4
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 6.1e-17 92.8 301 34.6
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.8e-16 91.3 313 31.9
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.8e-16 91.3 301 34.6
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.8e-16 91.3 309 35.3
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 6.7e-16 89.4 306 32.7
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 5.7e-15 86.3 347 33.1
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 1.7e-14 84.7 303 32.7
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-13 82.0 302 33.4
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.1e-13 82.0 232 34.1
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 1.8e-13 81.3 317 30.0
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 2.4e-13 80.9 201 35.8
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 4.1e-13 80.1 305 35.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 6.9e-13 79.3 307 32.9
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.0e-12 77.8 307 31.9
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 3.4e-12 77.0 223 33.6
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.3e-11 75.1 310 31.3
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 1.7e-11 74.7 296 34.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 8.5e-11 72.4 293 30.4
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 8.5e-11 72.4 311 31.5
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.1e-10 72.0 308 33.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.1e-10 72.0 314 29.6
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 7.2e-10 69.3 82 52.4
Actinidia30125 Actinidia chinensis HOM05D007706 ORTHO05D009593 3.6e-09 67.0 65 58.5
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 6.1e-09 66.2 90 45.6
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.0e-08 65.5 90 53.3
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.4e-08 65.1 85 43.5
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.8e-08 64.7 87 42.5
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 3.0e-08 63.9 85 52.9
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 3.9e-08 63.5 106 42.5
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 5.2e-08 63.2 110 42.7
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 5.2e-08 63.2 103 37.9
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 5.2e-08 63.2 213 28.6
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 6.7e-08 62.8 182 41.8
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 8.8e-08 62.4 50 60.0
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 1.1e-07 62.0 112 35.7
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 5.7e-07 59.7 81 44.4
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 7.4e-07 59.3 159 37.1
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 7.4e-07 59.3 215 31.2
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 2.2e-06 57.8 90 41.1
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 2.8e-06 57.4 180 32.8
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 2.8e-06 57.4 144 32.6
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 3.7e-06 57.0 36 69.4
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 3.7e-06 57.0 171 36.3
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 4.8e-06 56.6 176 31.2
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 6.3e-06 56.2 103 39.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 8.2e-06 55.8 35 68.6


User provided reference genes

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